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[176344_at]

Description Y38F2AR.D /REP_DB=WormBase Gene ID /WP=CE21629 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 09      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 18.8
(-1.3)
A 		5.4
(-3)
A 		53.3
(3)
A 		28.9
(-0.1)
A 		48
B 20.1
(-0.5)
A 		39.8
(3)
A 		6
(-3)
A 		16.1
(-1.2)
A 		34
C 3.7
(-3)
A 		9.5
(-2)
A 		37.6
(3)
A 		9.5
(-2)
A 		34
avr 14.2
(-3) 		18.2
(-1.7) 		32.3
(3) 		18.2
(-1.7) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.2
(-2.2)
A 		2.2
(-2.2)
A 		3.8
(-0.1)
A 		6.1
(3)
A 		2.3
(-2.1)
A 		1.6
(-3)
A 		5
B 19.1
(3)
A 		1.8
(-3)
A 		4.3
(-2.1)
A 		16.5
(2.1)
A 		2.7
(-2.7)
A 		4
(-2.2)
A 		17
C 3.4
(-2)
A 		5.8
(3)
A 		3.1
(-2.6)
A 		4.1
(-0.5)
A 		2.9
(-3)
A 		2.9
(-3)
A 		3
avr 8.2
(2.3) 		3.3
(-2.3) 		3.7
(-2) 		8.9
(3) 		2.6
(-3) 		2.8
(-2.8) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.9
(-0.3)
A 		1.2
(-3)
A 		13.9
(3)
A 		4.2
(-1.6)
A 		13
B 6.4
(0.6)
A 		9.8
(3)
A 		1.4
(-3)
A 		3.4
(-1.6)
A 		8
C 1.2
(-3)
A 		2.7
(-2.2)
A 		13.1
(3)
A 		1.6
(-2.8)
A 		12
avr 4.8
(-1.4) 		4.6
(-1.6) 		9.5
(3) 		3.1
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.8
(-0.8)
A 		0.8
(-0.8)
A 		1.5
(3)
A 		0.7
(-1.4)
A 		0.4
(-3)
A 		1
B 6.6
(3)
A 		0.6
(-3)
A 		1
(-2.6)
A 		4.4
(0.8)
A 		1.1
(-2.5)
A 		1.5
(-2.1)
A 		6
C 1.3
(0)
A 		1.8
(3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		0.9
(-2.4)
A 		1
(-1.8)
A 		1
avr 2.8
(3) 		1.1
(-2.4) 		0.9
(-3) 		2.2
(1.1) 		0.9
(-3) 		1
(-2.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176344_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19159
Sequence Type Exemplar sequence
Representative Public ID Y38F2AR.D NCBI
Target Description Y38F2AR.D /REP_DB=WormBase Gene ID /WP=CE21629 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y38F2AR.D
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y38F2AR.D Y38F2AR.D /REP_DB=WormBase Gene ID /WP=CE21629 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067797 11/11 Negative Strand Matching Probes A 
SNAP00000033665 9/11 Negative Strand Matching Probes None
GENEFINDER00000033672 9/11 Negative Strand Matching Probes None
Y38F2AR.2.1 11/11 Negative Strand Matching Probes A 
Y38F2AR.2.2 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2389855-2390176(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176344_AT
ggtcccgtttgtaaagatcgcttagttcttagcggtggagaggaaggcgacgagtccggc
ggatccgatggtggagatgagcaagttgaagactggagccacgttggcgagcaagaagaa
cgccgagacgagcatgatggtcaagtagagcgagtttgtgtagaagaccgacaagtaggt
ggattcggtgtcggcgacctcgtttttgcggaaaagcgcgcgctcctccttctccttaac
agtcattttcttgtcagcagcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCCCGTTTGTAAAGATCGCTTAG 71 501 40 Antisense
GATCGCTTAGTTCTTAGCGGTGGAG 150 415 55 Antisense
TGGAGAGGAAGGCGACGAGTCCGGC 631 541 75 Antisense
CCGGCGGATCCGATGGTGGAGATGA 104 267 95 Antisense
GACTGGAGCCACGTTGGCGAGCAAG 472 375 130 Antisense
GAACGCCGAGACGAGCATGATGGTC 434 347 157 Antisense
GAGCGAGTTTGTGTAGAAGACCGAC 103 385 187 Antisense
ACAAGTAGGTGGATTCGGTGTCGGC 6 5 210 Antisense
GCGACCTCGTTTTTGCGGAAAAGCG 683 285 233 Antisense
TCCTTCTCCTTAACAGTCATTTTCT 652 591 266 Antisense
CAGTCATTTTCTTGTCAGCAGCATA 676 205 279 Antisense
Sequence Source Affymetrix Proprietary Database