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[176343_at]

Description Y22D7AL.W /REP_DB=WormBase Gene ID /WP=CE23425 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 4grp_high_8_8 > 20      6grp_total > 21      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 122.3
(-1.5)
P 		124.1
(-1.3)
P 		101
(-3)
A 		183.5
(3)
P 		83
B 106.7
(-1.4)
A 		130.4
(0.7)
A 		89
(-3)
P 		155.5
(3)
P 		67
C 87.9
(-2.9)
A 		122.5
(0.2)
P 		86.8
(-3)
A 		154.7
(3)
P 		68
avr 105.6
(-1.9) 		125.7
(-0.2) 		92.3
(-3) 		164.6
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 59.2
(-1.7)
A 		99.9
(3)
P 		86.8
(1.5)
M 		80.3
(0.8)
A 		47.5
(-3)
A 		69.8
(-0.4)
A 		52
B 80.8
(0.5)
A 		100
(3)
P 		77.1
(0.1)
A 		61.9
(-1.9)
A 		65.4
(-1.4)
P 		53.1
(-3)
A 		47
C 103
(0.7)
P 		135.7
(3)
M 		90.4
(-0.2)
A 		118.1
(1.8)
A 		50.1
(-3)
A 		60.3
(-2.3)
A 		86
avr 81
(-0.2) 		111.9
(3) 		84.8
(0.2) 		86.8
(0.4) 		54.3
(-3) 		61.1
(-2.3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 44.5
(3)
P 		26.9
(-2.8)
P 		26.4
(-3)
A 		26.9
(-2.8)
P 		18
B 34
(3)
A 		32.2
(2.2)
A 		20.6
(-3)
P 		33.1
(2.6)
P 		13
C 29.1
(-1)
A 		35.2
(3)
P 		30.3
(-0.2)
A 		26.1
(-3)
P 		9
avr 35.9
(3) 		31.4
(0.3) 		25.8
(-3) 		28.7
(-1.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 10.9
(-3)
A 		35.5
(3)
P 		18.9
(-1)
M 		20.4
(-0.7)
A 		14.3
(-2.2)
A 		17
(-1.5)
A 		25
B 28.1
(1.2)
A 		33.3
(3)
P 		18.7
(-2.2)
A 		16.4
(-3)
A 		26.6
(0.6)
P 		19.8
(-1.8)
A 		17
C 38.2
(2.2)
P 		41.4
(3)
M 		23
(-1.4)
A 		23.8
(-1.2)
A 		16.2
(-3)
A 		20.2
(-2)
A 		25
avr 25.7
(-0.7) 		36.7
(3) 		20.2
(-2.6) 		20.2
(-2.6) 		19
(-3) 		19
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176343_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18997
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.W NCBI
Target Description Y22D7AL.W /REP_DB=WormBase Gene ID /WP=CE23425 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065035 NCBI Caenorhabditis elegans Y22D7AL.1 (Y22D7AL.1) mRNA, complete cds. 11/11 None
Y22D7AL.1 ENSEMBL cdna:known chromosome:CEL140:III:1650291:1652658:1 gene:Y22D7AL.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002285 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1650290-1652658(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AL.1
Entrez Gene 189500 Entrez gene
SwissProt Q965P3 EMBL-EBI
WormBase CE23425 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84583 Hypothetical protein Y22D7AL.1 [Caenorhabditis elegans] ref|NP_497436.1| Y22D7AL.1 [Caenorhabditis elegans] 1.0E-40
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497436.1 2 38-60,75-97
Y22D7AL.1 2 38-60,75-97
Sequence
Target Sequence 
>C. ELEGANS:176343_AT
gagctgtgcaccctattcaagtgaaccaggcttcaactcaggaatcacaagatcacaact
ctaccaacaattgcagtaacaggatgaaggttctctgctgtatcgctgtcttcataattc
ttgttatcatcattgttctcatttttgttttcaggaaaatgccaaccccaaccgaatcat
cctcaactcttcgcaagaccctctggtggttcttcatcttctatgtcctgctcaagatcg
tcgtcatcgtcttcatcatcggttactactcgaaatatggtgtcgccgacaaaaactcga
ccatcatcgtcttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTGTGCACCCTATTCAAGTGAA 499 387 38 Antisense
GAACCAGGCTTCAACTCAGGAATCA 640 345 60 Antisense
GAATCACAAGATCACAACTCTACCA 649 327 79 Antisense
GGATGAAGGTTCTCTGCTGTATCGC 99 515 119 Antisense
GCTGTATCGCTGTCTTCATAATTCT 552 295 134 Antisense
TTCAGGAAAATGCCAACCCCAACCG 208 685 187 Antisense
TCATCTTCTATGTCCTGCTCAAGAT 317 621 251 Antisense
TGCTCAAGATCGTCGTCATCGTCTT 121 579 266 Antisense
ATCGTCTTCATCATCGGTTACTACT 656 35 283 Antisense
CTACTCGAAATATGGTGTCGCCGAC 503 225 303 Antisense
AAAAACTCGACCATCATCGTCTTCG 70 131 328 Antisense
Sequence Source Affymetrix Proprietary Database