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[176342_at]

Description Y105E8B.EE /REP_DB=WormBase Gene ID /WP=CE26391 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_total > 46      4grp_total > 54      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 222.4
(3)
A 		151.3
(-1.2)
A 		154.5
(-1.1)
A 		122
(-3)
A 		100
B 163.9
(2.8)
A 		166.7
(3)
A 		120.3
(0.1)
A 		69.2
(-3)
A 		98
C 199.4
(3)
P 		121
(-1.6)
A 		97.1
(-3)
A 		114.3
(-2)
A 		102
avr 195.2
(3) 		146.3
(-0.1) 		124
(-1.6) 		101.8
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 103.6
(2.9)
A 		104.3
(3)
A 		30.9
(-3)
A 		32.4
(-2.9)
A 		41
(-2.2)
A 		77
(0.8)
A 		73
B 82.9
(0.6)
A 		53.9
(-1.8)
A 		39.8
(-3)
A 		93.9
(1.5)
A 		56.5
(-1.6)
A 		111.2
(3)
A 		71
C 43.4
(-3)
A 		95.6
(2.4)
A 		101.7
(3)
A 		60.8
(-1.2)
A 		47.6
(-2.6)
A 		73.5
(0.1)
A 		58
avr 76.6
(1.4) 		84.6
(2.6) 		57.5
(-1.6) 		62.4
(-0.8) 		48.4
(-3) 		87.2
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 81
(3)
A 		32.8
(-1.6)
A 		40.4
(-0.9)
A 		17.9
(-3)
A 		63
B 52.3
(3)
A 		41.2
(1.2)
A 		27.9
(-0.9)
A 		14.8
(-3)
A 		38
C 66
(3)
P 		34.8
(-1)
A 		33.8
(-1.1)
A 		19.3
(-3)
A 		47
avr 66.4
(3) 		36.3
(-0.7) 		34
(-1) 		17.3
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 19.1
(-0.6)
A 		37.1
(3)
A 		6.7
(-3)
A 		8.2
(-2.7)
A 		12.4
(-1.9)
A 		18.7
(-0.6)
A 		30
B 28.9
(0.6)
A 		18
(-1.4)
A 		9.7
(-3)
A 		24.9
(-0.1)
A 		23
(-0.5)
A 		41.5
(3)
A 		32
C 16.1
(-1.6)
A 		29.2
(3)
A 		25.9
(1.8)
A 		12.2
(-3)
A 		15.4
(-1.9)
A 		24.6
(1.4)
A 		17
avr 21.4
(0.1) 		28.1
(2.9) 		14.1
(-3) 		15.1
(-2.6) 		16.9
(-1.8) 		28.3
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176342_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18768
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.EE NCBI
Target Description Y105E8B.EE /REP_DB=WormBase Gene ID /WP=CE26391 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170957(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170957 NCBI Caenorhabditis elegans Y105E8A.25 (Y105E8A.25) mRNA, complete cds. 11/11 A 
GENEFINDER00000013507 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14600186:14612257:-1 11/11 None
Y105E8A.25 ENSEMBL cdna:known chromosome:CEL140:I:14600061:14612257:-1 gene:Y105E8A.25 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026518 4/11 Cross Hyb Matching Probes None
SNAP00000013363 5/11 Cross Hyb Matching Probes None
SNAP00000013364 1/11 Cross Hyb Matching Probes None
Y105E8A.29 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14608240-14624573(-) 94.26 94.26
Public Domain and Genome References
Gene Title
Ensembl Y105E8A.25
Entrez Gene 3564893 Entrez gene
SwissProt Q8WQA2 EMBL-EBI
WormBase CE29843 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD21671 Hypothetical protein Y105E8A.25 [Caenorhabditis elegans] ref|NP_740953.1| Y105E8A.25 [Caenorhabditis elegans] 0.0
blast CAE72602 Hypothetical protein CBG19792 [Caenorhabditis briggsae] 7.0E-97
blast CAE72602 Hypothetical protein CBG19792 [Caenorhabditis briggsae] 7.0E-92
Sequence
Target Sequence 
>C. ELEGANS:176342_AT
gagcagcaaccgtattttggagccgatttccagactgaatcctcaatttcatggaattct
ccaacttctccaccgccgccaccaatgattgttgaagaggagatgagaagcggtggtggc
accgcccgtcctgtcactccgcggagcattgcaaattcgttggattcgttgtccgagtgt
gcacagcatcatcatcatcatagtgatgttgtaaatgccaattcgaatagtgatcggagc
cggagcctcggagatctgttagcggcaacaatgcaagacggaaacgacgattctctgcga
aatgggagttacgatactctggtcactactactacaaaaggaggaggtctaacagatagt
ggaattggcggaggattgttgttgatgaagggggaggatgaaatggatattatggatgat
cacaattcatcatcttcccctgatcatcatcgaattccgacggatatctcatcgcctgat
tcattcacctacccaccagtatccttcacatcatacgatccagttaacggctctggctca
gtgccgtcttattcgaatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAGCAACCGTATTTTGGAGCCG 85 389 226 Antisense
GAGCCGATTTCCAGACTGAATCCTC 691 383 245 Antisense
GATTCGTTGTCCGAGTGTGCACAGC 150 433 388 Antisense
GCCGGAGCCTCGGAGATCTGTTAGC 611 283 464 Antisense
GACGGAAACGACGATTCTCTGCGAA 644 375 502 Antisense
GTTACGATACTCTGGTCACTACTAC 429 445 533 Antisense
ATCTTCCCCTGATCATCATCGAATT 528 31 657 Antisense
GATATCTCATCGCCTGATTCATTCA 114 427 688 Antisense
TATCCTTCACATCATACGATCCAGT 50 659 725 Antisense
GATCCAGTTAACGGCTCTGGCTCAG 240 415 742 Antisense
GCTCAGTGCCGTCTTATTCGAATGA 580 301 761 Antisense
Sequence Source Affymetrix Proprietary Database