[Home] | [Total List]

[176341_at]

Description Y71G12B.I /REP_DB=WormBase Gene ID /WP=CE26255 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 4grp_high_8_8 > 36      6grp_total > 51      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 97.3
(-1)
P 		122.3
(0.5)
P 		62.9
(-3)
P 		165.3
(3)
M 		102
B 75.7
(-3)
P 		97.2
(2.7)
A 		97.3
(2.7)
A 		98.3
(3)
P 		23
C 90.8
(-1.2)
P 		130.8
(3)
P 		101.9
(-0)
P 		73.9
(-3)
A 		57
avr 87.9
(-2.9) 		116.8
(3) 		87.4
(-3) 		112.5
(2.1) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 31
(-2.5)
A 		38.4
(-0.4)
P 		48.8
(2.5)
P 		29.3
(-3)
A 		48.3
(2.4)
A 		50.6
(3)
A 		21
B 83.8
(1.1)
A 		33.2
(-3)
A 		108.1
(3)
A 		64
(-0.5)
P 		48.6
(-1.8)
A 		52.5
(-1.5)
P 		75
C 54.8
(-0.1)
P 		86.4
(2)
A 		73.8
(1.2)
P 		101.1
(3)
P 		27.4
(-1.9)
A 		11.6
(-3)
A 		90
avr 56.5
(-0.2) 		52.7
(-0.8) 		76.9
(3) 		64.8
(1.1) 		41.4
(-2.5) 		38.2
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 35.4
(3)
P 		26.5
(0.2)
P 		16.4
(-3)
P 		24.2
(-0.5)
M 		19
B 24.2
(3)
P 		24
(2.6)
A 		22.6
(0.1)
A 		20.9
(-3)
P 		3
C 30
(1.2)
P 		37.6
(3)
P 		35.5
(2.5)
P 		12.5
(-3)
A 		25
avr 29.9
(3) 		29.4
(2.7) 		24.8
(0.1) 		19.2
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 5.7
(-3)
A 		13.7
(2.4)
P 		10.6
(0.3)
P 		7.4
(-1.9)
A 		14.6
(3)
A 		12.3
(1.4)
A 		9
B 29.2
(3)
A 		11.1
(-3)
A 		26.2
(2)
A 		17
(-1)
P 		19.7
(-0.1)
A 		19.6
(-0.2)
P 		18
C 20.3
(1.4)
P 		26.4
(3)
A 		18.8
(1)
P 		20.3
(1.4)
P 		8.9
(-1.7)
A 		3.9
(-3)
A 		23
avr 18.4
(2.9) 		17.1
(1.7) 		18.5
(3) 		14.9
(-0.3) 		14.4
(-0.7) 		11.9
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176341_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18681
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.I NCBI
Target Description Y71G12B.I /REP_DB=WormBase Gene ID /WP=CE26255 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y71G12B.I
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y71G12B.I Y71G12B.I /REP_DB=WormBase Gene ID /WP=CE26255 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1732679-1734610(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176341_AT
cggaaaccattgggaccgctgttcttgccgtttcgaagagtcgaacggatgtttcgagga
ctttgtaggagtcacggatgaggcggctctgtgctttgaacttctctccaggcgtgttgt
cgaccttctggctttcacggatggaggtgatgaggctgaaaataggaaatttgtagaggg
gaaagaaacgaagatgattaggaagcctatgctcccattggcttatgttcccattgggcc
taagtggtctcggtgcgcttgtgctcttgctgcttcttctgtaaatagacaacaaaccgt
gtctgtcaccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGAAACCATTGGGACCGCTGTTCT 579 241 21 Antisense
GCTGTTCTTGCCGTTTCGAAGAGTC 476 295 38 Antisense
AACGGATGTTTCGAGGACTTTGTAG 526 137 64 Antisense
AGTCACGGATGAGGCGGCTCTGTGC 589 61 90 Antisense
ACCTTCTGGCTTTCACGGATGGAGG 532 87 143 Antisense
ACGGATGGAGGTGATGAGGCTGAAA 503 95 157 Antisense
ATTAGGAAGCCTATGCTCCCATTGG 427 11 217 Antisense
CTATGCTCCCATTGGCTTATGTTCC 325 223 227 Antisense
TTGGCTTATGTTCCCATTGGGCCTA 163 709 238 Antisense
CCATTGGGCCTAAGTGGTCTCGGTG 622 267 251 Antisense
GACAACAAACCGTGTCTGTCACCCT 243 351 308 Antisense
Sequence Source Affymetrix Proprietary Database