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[176340_at]

Description Y22D7AR.K /REP_DB=WormBase Gene ID /WP=CE23432 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 34      4grp_total > 04      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 38.1
(-1.3)
A 		6
(-3)
A 		24.7
(-2)
A 		117
(3)
P 		111
B 50.8
(1.1)
A 		32.5
(-3)
A 		44.8
(-0.3)
A 		59.5
(3)
A 		27
C 44.5
(-1.8)
A 		30.6
(-2.6)
A 		22.5
(-3)
A 		134.7
(3)
P 		112
avr 44.5
(-1.4) 		23
(-3) 		30.7
(-2.4) 		103.7
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 36.7
(0)
A 		25.6
(-1.3)
A 		62.1
(3)
P 		35.6
(-0.1)
A 		37.3
(0.1)
A 		10.7
(-3)
A 		51
B 32.7
(-0.3)
A 		37.1
(0.9)
A 		44.8
(3)
A 		23
(-3)
A 		26.9
(-1.9)
A 		35.7
(0.5)
A 		22
C 33.4
(0.8)
A 		49.4
(3)
A 		6
(-3)
A 		6.7
(-2.9)
A 		21.1
(-0.9)
A 		34.8
(1)
A 		43
avr 34.3
(1.7) 		37.4
(2.9) 		37.6
(3) 		21.8
(-3) 		28.4
(-0.5) 		27.1
(-1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 13.9
(1.8)
A 		1.3
(-3)
A 		6.5
(-1)
A 		17.1
(3)
P 		16
B 16.2
(3)
A 		8
(-3)
A 		10.4
(-1.2)
A 		12.7
(0.4)
A 		8
C 14.7
(-0.2)
A 		8.8
(-2.6)
A 		7.8
(-3)
A 		22.7
(3)
P 		15
avr 14.9
(1.6) 		6
(-3) 		8.2
(-1.9) 		17.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.8
(-0.7)
A 		9.1
(0.6)
A 		13.5
(3)
P 		9
(0.5)
A 		11.3
(1.8)
A 		2.6
(-3)
A 		11
B 11.4
(1.4)
A 		12.3
(2.2)
A 		10.9
(1)
A 		6.1
(-3)
A 		10.9
(1)
A 		13.3
(3)
A 		7
C 12.4
(1.8)
A 		15.1
(3)
A 		1.5
(-3)
A 		1.4
(-3)
A 		6.8
(-0.6)
A 		11.6
(1.5)
A 		14
avr 10.2
(1.2) 		12.2
(3) 		8.6
(-0.2) 		5.5
(-3) 		9.7
(0.8) 		9.2
(0.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176340_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18988
Sequence Type Exemplar sequence
Representative Public ID Y22D7AR.K NCBI
Target Description Y22D7AR.K /REP_DB=WormBase Gene ID /WP=CE23432 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065039(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065039 NCBI Caenorhabditis elegans Y22D7AR.3 (Y22D7AR.3) mRNA, complete cds. 11/11 None
GENEFINDER00000025844 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1665422:1668608:-1 11/11 None
Y22D7AR.3 ENSEMBL cdna:known chromosome:CEL140:III:1665482:1665782:-1 gene:Y22D7AR.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1665481-1665782(-) 93.94 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AR.3
Entrez Gene 189511 Entrez gene
SwissProt Q9BKY1 EMBL-EBI
WormBase CE23432 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29871 Hypothetical protein Y22D7AR.4 [Caenorhabditis elegans] ref|NP_497441.1| Y22D7AR.4 [Caenorhabditis elegans] 4.0E-81
blast CAE66460 Hypothetical protein CBG11737 [Caenorhabditis briggsae] 1.0E-52
blast AAK29872 Hypothetical protein Y22D7AR.3 [Caenorhabditis elegans] ref|NP_497440.1| Y22D7AR.3 [Caenorhabditis elegans] 3.0E-32
blast AAK29872 Hypothetical protein Y22D7AR.3 [Caenorhabditis elegans] ref|NP_497440.1| Y22D7AR.3 [Caenorhabditis elegans] 5.0E-28
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 1.79999995231628
Pfam IPR000971 EMBL-EBI Globin 8.5E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000025844 2 274-296,339-361
Sequence
Target Sequence 
>C. ELEGANS:176340_AT
caattttttgttggctggctcaattgcacgaaatgctcggcgggatatgctctacgtcgc
cgcgaattatcgattattgtacccgaatatttcatttgtcgccgaaaatccgacgtcgaa
ccattcgaggaatcttcgccgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTTTTTGTTGGCTGGCTCAATT 613 179 38 Antisense
GGCTGGCTCAATTGCACGAAATGCT 302 539 50 Antisense
AATTGCACGAAATGCTCGGCGGGAT 95 179 59 Antisense
AAATGCTCGGCGGGATATGCTCTAC 591 119 68 Antisense
TATGCTCTACGTCGCCGCGAATTAT 603 657 83 Antisense
ACGTCGCCGCGAATTATCGATTATT 367 95 91 Antisense
ATTATCGATTATTGTACCCGAATAT 243 13 103 Antisense
GTACCCGAATATTTCATTTGTCGCC 662 457 116 Antisense
ATTTGTCGCCGAAAATCCGACGTCG 251 17 131 Antisense
GAAAATCCGACGTCGAACCATTCGA 390 353 141 Antisense
AACCATTCGAGGAATCTTCGCCGAC 604 145 156 Antisense
Sequence Source Affymetrix Proprietary Database