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[176339_at]

Description Y22D7AR.M /REP_DB=WormBase Gene ID /WP=CE26514 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 57      4grp_total > 05      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.2
(-2)
A 		1.9
(-3)
A 		2.4
(-1.3)
A 		3.7
(3)
A 		2
B 3.3
(3)
A 		2.3
(-0.2)
A 		2.5
(0.5)
A 		1.4
(-3)
A 		2
C 4.6
(-0.6)
A 		1.6
(-3)
A 		1.7
(-2.9)
A 		9.1
(3)
A 		8
avr 3.4
(0.2) 		1.9
(-3) 		2.2
(-2.4) 		4.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 6.4
(-0.3)
A 		6.6
(-0.2)
A 		2.2
(-2.4)
A 		0.9
(-3)
A 		13.2
(3)
A 		5.8
(-0.6)
A 		12
B 2.5
(-1.8)
A 		2.7
(-1.7)
A 		9.5
(3)
A 		1.4
(-2.6)
A 		1
(-2.9)
A 		0.8
(-3)
A 		9
C 1.9
(-2.9)
A 		13.2
(0.4)
A 		1.9
(-2.9)
A 		1.5
(-3)
A 		2.7
(-2.7)
A 		22.2
(3)
A 		21
avr 3.6
(-1.3) 		7.5
(1.5) 		4.5
(-0.7) 		1.3
(-3) 		5.6
(0.1) 		9.6
(3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.8
(3)
A 		0.4
(-3)
A 		0.6
(-0)
A 		0.5
(-1.5)
A 		0
B 1
(3)
A 		0.6
(-0.4)
A 		0.6
(-0.4)
A 		0.3
(-3)
A 		1
C 1.5
(3)
A 		0.5
(-3)
A 		0.6
(-2.4)
A 		1.5
(3)
A 		1
avr 1.1
(3) 		0.5
(-3) 		0.6
(-2) 		0.8
(0) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.2
(-1.4)
A 		2.3
(0.3)
A 		0.5
(-2.5)
A 		0.2
(-3)
A 		4
(3)
A 		1.4
(-1.1)
A 		4
B 0.9
(-1.2)
A 		0.9
(-1.2)
A 		2.3
(3)
A 		0.4
(-2.7)
A 		0.4
(-2.7)
A 		0.3
(-3)
A 		2
C 0.7
(-2.7)
A 		4
(0.1)
A 		0.5
(-2.8)
A 		0.3
(-3)
A 		0.9
(-2.5)
A 		7.4
(3)
A 		7
avr 0.9
(-1.7) 		2.4
(1.7) 		1.1
(-1.2) 		0.3
(-3) 		1.8
(0.3) 		3
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176339_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18989
Sequence Type Exemplar sequence
Representative Public ID Y22D7AR.M NCBI
Target Description Y22D7AR.M /REP_DB=WormBase Gene ID /WP=CE26514 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065049(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065049 NCBI Caenorhabditis elegans Y22D7AR.1 (Y22D7AR.1) mRNA, complete cds. 11/11 None
GENEFINDER00000025842 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1705977:1715165:1 11/11 None
Y22D7AR.1 ENSEMBL cdna:known chromosome:CEL140:III:1713421:1714620:1 gene:Y22D7AR.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1713420-1714620(+) 50.33 93.07
Public Domain and Genome References
Gene Title
Ensembl Y22D7AR.1
Entrez Gene 189509 Entrez gene
SwissProt Q9BKX1 EMBL-EBI
WormBase CE26514 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29873 Hypothetical protein Y22D7AR.2 [Caenorhabditis elegans] ref|NP_497449.1| Y22D7AR.2 [Caenorhabditis elegans] 0.0
blast AAK21449 Hypothetical protein R06B10.2 [Caenorhabditis elegans] ref|NP_497309.1| R06B10.2 [Caenorhabditis elegans] 0.0
blast AAB54272 Hypothetical protein R155.2 [Caenorhabditis elegans] ref|NP_497484.1| R155.2 [Caenorhabditis elegans] 0.0
blast AAK29874 Hypothetical protein Y22D7AR.1 [Caenorhabditis elegans] ref|NP_497450.1| Y22D7AR.1 [Caenorhabditis elegans] 5.0E-80
blast AAB54272 Hypothetical protein R155.2 [Caenorhabditis elegans] ref|NP_497484.1| R155.2 [Caenorhabditis elegans] 2.0E-41
blast AAB54273 Hypothetical protein R155.3 [Caenorhabditis elegans] ref|NP_497485.1| R155.3 [Caenorhabditis elegans] 1.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 5.7E-29
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.7E-19
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.7E-10
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 9.6E-34
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 9.9E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000025842 2 1056-1078,1123-1145
Sequence
Target Sequence 
>C. ELEGANS:176339_AT
ggtggagtacttaagaatgagcctaagcttaaatctaagcctaaccctaagcctgagcct
aagcctaaacctaagcctgagcctaaacctaaacctaagcctgaccctaagcctaaacct
aagcctaagcctaagcctaagcctaagcctaaccctaagcctgagcctaagcctaaacct
aagcctgagcctaaacctaaacctaagcctgagcctaagcctaaacctaagcctaagcct
aagcctaagcctaagcctaaccctaatcctaagcctgaacctaagccaaaacctaagcct
aagcctaagcctgagcctaagcctaagactaagcttaagtctgagccaaaacctaagcct
aagcttaagcctaagcctaagcctaaccctaagcctgagcctaatcctatgcctgagctt
aagcctaagcccaagcataagcctaattctaggcctaagcctaatcctaggcctaagcct
aagccaaggtctaagcctaatcctaagcctaagccaaggcctaagcctgagcttaagcct
aaccataaacttaagctgaagcatctgagtttaagtgttcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGAGTACTTAAGAATGAGCCTA 68 499 454 Antisense
CCCTAATCCTAAGCCTGAACCTAAG 173 1 714 Antisense
TGAACCTAAGCCAAAACCTAAGCCT 603 531 729 Antisense
AAGTCTGAGCCAAAACCTAAGCCTA 247 157 790 Antisense
AATCCTATGCCTGAGCTTAAGCCTA 141 167 856 Antisense
AAGCCCAAGCATAAGCCTAATTCTA 549 149 880 Antisense
AAGCCAAGGTCTAAGCCTAATCCTA 253 149 934 Antisense
TAAGCCAAGGCCTAAGCCTGAGCTT 453 637 963 Antisense
AAGCCTGAGCTTAAGCCTAACCATA 121 149 976 Antisense
AAGCCTAACCATAAACTTAAGCTGA 248 149 988 Antisense
GAAGCATCTGAGTTTAAGTGTTCGC 428 341 1011 Antisense
Sequence Source Affymetrix Proprietary Database