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[176338_at]

Description Y19D10A.D /REP_DB=WormBase Gene ID /WP=CE21445 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 19      4grp_total > 51      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 62.3
(0.9)
A 		90.1
(3)
A 		64.9
(1.1)
A 		11.7
(-3)
A 		78
B 45
(1.7)
A 		47.1
(3)
A 		40.1
(-1.5)
A 		37.7
(-3)
A 		9
C 65.8
(0.3)
M 		107.8
(3)
A 		48.2
(-0.8)
A 		14.1
(-3)
A 		94
avr 57.7
(0.6) 		81.7
(3) 		51.1
(-0) 		21.2
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 87.8
(3)
A 		41.5
(-1.8)
A 		48.6
(-1.1)
A 		44
(-1.6)
A 		85.5
(2.8)
A 		30.1
(-3)
A 		58
B 81.6
(3)
P 		62.2
(0.9)
A 		50.8
(-0.4)
A 		51.1
(-0.4)
A 		43
(-1.2)
A 		27
(-3)
A 		55
C 64.7
(3)
A 		58.1
(1.9)
A 		44.4
(-0.4)
A 		44.3
(-0.4)
A 		48.7
(0.3)
A 		29.2
(-3)
A 		36
avr 78
(3) 		53.9
(0.1) 		47.9
(-0.7) 		46.5
(-0.8) 		59.1
(0.7) 		28.8
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 22.7
(3)
A 		19.6
(2.1)
A 		17
(1.4)
A 		1.7
(-3)
A 		21
B 14.4
(3)
A 		11.6
(0.4)
A 		9.3
(-1.8)
A 		8
(-3)
A 		6
C 21.8
(1.1)
M 		31
(3)
A 		16.8
(0)
A 		2.4
(-3)
A 		29
avr 19.6
(2.6) 		20.7
(3) 		14.4
(0.7) 		4
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 16.2
(-0.1)
A 		14.8
(-0.6)
A 		10.6
(-1.9)
A 		11.2
(-1.7)
A 		25.8
(3)
A 		7.3
(-3)
A 		19
B 28.4
(3)
P 		20.7
(0.5)
A 		12.3
(-2.3)
A 		13.5
(-1.9)
A 		17.5
(-0.6)
A 		10.1
(-3)
A 		18
C 24
(3)
A 		17.7
(0.5)
A 		11.3
(-2)
A 		8.9
(-3)
A 		15.8
(-0.3)
A 		9.8
(-2.6)
A 		15
avr 22.9
(3) 		17.7
(0.7) 		11.4
(-2) 		11.2
(-2.1) 		19.7
(1.6) 		9.1
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176338_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19469
Sequence Type Exemplar sequence
Representative Public ID Y19D10A.D NCBI
Target Description Y19D10A.D /REP_DB=WormBase Gene ID /WP=CE21445 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y19D10A.D
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y19D10A.D Y19D10A.D /REP_DB=WormBase Gene ID /WP=CE21445 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071256 11/11 Negative Strand Matching Probes A 
NM_071282 11/11 Negative Strand Matching Probes A 
GENEFINDER00000008437 11/11 Negative Strand Matching Probes None
GENEFINDER00000029978 11/11 Negative Strand Matching Probes None
Y19D10A.4 11/11 Negative Strand Matching Probes A 
C01B4.7 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2497370-2497565(-) 100.0 100.0
chrV:2389091-2389286(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176338_AT
gacatctcattgccaggcacttgacacatgccattatgataagaccggacgtgacaacgg
caaaggcaaatgcaacgaaggccacgtttcggtcggaagtccacgccatgattatgtagc
cgatgccgagtccgatgatcgaggagaagagccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATCTCATTGCCAGGCACTTGAC 222 369 21 Antisense
GCCAGGCACTTGACACATGCCATTA 260 281 32 Antisense
GACACATGCCATTATGATAAGACCG 519 365 43 Antisense
GATAAGACCGGACGTGACAACGGCA 175 423 58 Antisense
GACGTGACAACGGCAAAGGCAAATG 22 377 68 Antisense
TGCAACGAAGGCCACGTTTCGGTCG 265 575 91 Antisense
TCGGAAGTCCACGCCATGATTATGT 633 605 113 Antisense
GTCCACGCCATGATTATGTAGCCGA 336 477 119 Antisense
TGATTATGTAGCCGATGCCGAGTCC 496 563 129 Antisense
GCCGATGCCGAGTCCGATGATCGAG 287 285 139 Antisense
CCGATGATCGAGGAGAAGAGCCAGA 570 263 152 Antisense
Sequence Source Affymetrix Proprietary Database