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[176333_s_at]

Description Y19D10A.G /REP_DB=WormBase Gene ID /WP=CE20877 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 99      4grp_total > 09      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 17.4
(-2.8)
A 		29.3
(-2)
A 		14.4
(-3)
A 		103.1
(3)
A 		89
B 4.4
(-2.8)
A 		3
(-3)
A 		38.8
(2.6)
A 		41.7
(3)
A 		39
C 4.4
(-2.9)
A 		11.2
(-2.3)
A 		3.7
(-3)
A 		68.5
(3)
A 		65
avr 8.7
(-3) 		14.5
(-2.4) 		19
(-2) 		71.1
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 7.1
(-1.7)
A 		8.4
(-1.4)
A 		24.2
(2.6)
A 		2.2
(-3)
A 		12.4
(-0.4)
A 		25.6
(3)
A 		23
B 5
(-3)
A 		5.1
(-3)
A 		6.4
(-2.6)
A 		5.8
(-2.8)
A 		25.8
(3)
A 		17.7
(0.7)
A 		21
C 16.8
(-1.6)
A 		37.2
(0.6)
A 		55.9
(2.7)
A 		3.9
(-3)
A 		59.1
(3)
A 		41.7
(1.1)
A 		55
avr 9.6
(-1.8) 		16.9
(-0.3) 		28.8
(2.2) 		4
(-3) 		32.4
(3) 		28.3
(2.1) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.3
(-1.7)
A 		6.4
(-1.6)
A 		3.8
(-3)
A 		15.1
(3)
A 		11
B 1.4
(-2.5)
A 		0.7
(-3)
A 		9
(3)
A 		8.9
(2.9)
A 		8
C 1.5
(-2.9)
A 		3.2
(-1.9)
A 		1.3
(-3)
A 		11.5
(3)
A 		10
avr 3.1
(-3) 		3.4
(-2.8) 		4.7
(-1.9) 		11.8
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.3
(-2.3)
A 		3
(-0.4)
A 		5.3
(2)
A 		0.6
(-3)
A 		3.7
(0.3)
A 		6.2
(3)
A 		6
B 1.8
(-2.8)
A 		1.7
(-2.9)
A 		1.5
(-3)
A 		1.5
(-3)
A 		10.5
(3)
A 		6.6
(0.4)
A 		9
C 6.2
(-1.2)
A 		11.3
(0.4)
A 		14.2
(1.4)
A 		0.8
(-3)
A 		19.1
(3)
A 		14
(1.3)
A 		18
avr 3.1
(-1.8) 		5.3
(-0.4) 		7
(0.6) 		1
(-3) 		11.1
(3) 		8.9
(1.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176333_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19523
Sequence Type Exemplar sequence
Representative Public ID Y19D10A.G NCBI
Target Description Y19D10A.G /REP_DB=WormBase Gene ID /WP=CE20877 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071252(11), NM_071278(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071252 NCBI Caenorhabditis elegans Y19D10A.10 (Y19D10A.10) mRNA, complete cds. 11/11 None
NM_071278 NCBI Caenorhabditis elegans F56A4.11 (F56A4.11) mRNA, complete cds. 11/11 A 
SNAP00000029968 ENSEMBL cdna:SNAP chromosome:CEL140:V:2361555:2372351:-1 11/11 None
GENEFINDER00000029984 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2360773:2362395:-1 11/11 None
SNAP00000032949 ENSEMBL cdna:SNAP chromosome:CEL140:V:2469516:2480312:-1 11/11 None
GENEFINDER00000032957 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2468734:2470356:-1 11/11 None
Y19D10A.10 ENSEMBL cdna:known chromosome:CEL140:V:2361555:2367451:-1 gene:Y19D10A.10 11/11 None
F56A4.11 ENSEMBL cdna:known chromosome:CEL140:V:2469516:2475412:-1 gene:F56A4.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2361554-2367451(-) 95.95 100.0
chrV:2469515-2475412(-) 96.75 100.0
Public Domain and Genome References
Gene Title

Ensembl Y19D10A.10
F56A4.11
Entrez Gene 186354 Entrez gene
189487 Entrez gene
SwissProt Q9N5Q9 EMBL-EBI
Q966D8 EMBL-EBI
WormBase CE23773 Wormbase
CE32236 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503653 Y19D10A.10 [Caenorhabditis elegans] gb|AAK68410.2| Hypothetical protein Y19D10A.10 [Caenorhabditis elegans] 0.0
blast AAF39849 Hypothetical protein F56A4.11 [Caenorhabditis elegans] ref|NP_503679.1| F56A4.11 [Caenorhabditis elegans] 0.0
blast NP_503654 Y19D10A.11 [Caenorhabditis elegans] gb|AAK68411.2| Hypothetical protein Y19D10A.11 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503653.2 16 31-53,83-105,112-131,141-163,170-192,202-221,280-302,334-356,363-385,390-412,419-441,451-470,501-523,538-560,572-594,623-645
NP_503679.1 18 31-53,126-148,155-174,184-206,213-235,245-264,323-345,377-399,406-428,433-455,462-484,494-513,545-567,582-600,613-635,639-661,674-696,706-728
Y19D10A.10 16 31-53,83-105,112-131,141-163,170-192,202-221,280-302,334-356,363-385,390-412,419-441,451-470,501-523,538-560,572-594,623-645
F56A4.11 18 31-53,126-148,155-174,184-206,213-235,245-264,323-345,377-399,406-428,433-455,462-484,494-513,545-567,582-600,613-635,639-661,674-696,706-728
SNAP00000029968 26 68-89,99-121,128-147,157-179,186-208,250-272,285-304,319-341,348-365,370-392,413-435,445-464,471-493,503-525,532-554,631-653,660-682,687-709,716-738,748-767,799-821,836-854,867-889,893-915,928-950,960-982
GENEFINDER00000029984 6 27-49,64-82,95-117,121-143,156-178,188-210
SNAP00000032949 26 68-89,99-121,128-147,157-179,186-208,250-272,285-304,319-341,348-365,370-392,413-435,445-464,471-493,503-525,532-554,631-653,660-682,687-709,716-738,748-767,799-821,836-854,867-889,893-915,928-950,960-982
GENEFINDER00000032957 6 27-49,64-82,95-117,121-143,156-178,188-210
Sequence
Target Sequence 
>C. ELEGANS:176333_S_AT
gtcaaggtaccttgccatttgcaccgacccaactgttcttatcacttggatcacttgttt
tggaggctttgtcggcctatattccctgtctctttacggcccaacttatctccgagaaat
actcaagttcgatgtaagggaaactggatttttgtcagctcttccatttattctatcagc
gattatcaagtttgcagccggcaagatttcagacaagttgtctttcttatcggaaaagtc
tcgattcgtatttttcgctgcaacctctcaaattggattcgtcgccgggttacttgtaat
ggcttttaccacgaatcggttaattgctcaaattgcgttcaattttgcgattgtatcgtc
cggaatgaatgtgatgggagtttttaaagttgtgcaattgtggacaacgcttttcctggt
gatcagtgcaatcataattgtgtgcacggtcgggttcccattcctcaccaaatcagatgc
cgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAAGGTACCTTGCCATTTGCACC 9 465 1611 Antisense
AACTGTTCTTATCACTTGGATCACT 17 143 1641 Antisense
GATCACTTGTTTTGGAGGCTTTGTC 699 419 1659 Antisense
TTTGTCAGCTCTTCCATTTATTCTA 690 665 1761 Antisense
GCGATTATCAAGTTTGCAGCCGGCA 407 289 1789 Antisense
GCAGCCGGCAAGATTTCAGACAAGT 19 313 1804 Antisense
GTCTCGATTCGTATTTTTCGCTGCA 194 471 1848 Antisense
TCAAATTGGATTCGTCGCCGGGTTA 542 625 1878 Antisense
TGGACAACGCTTTTCCTGGTGATCA 10 547 2011 Antisense
TAATTGTGTGCACGGTCGGGTTCCC 175 629 2045 Antisense
CATTCCTCACCAAATCAGATGCCGC 405 217 2069 Antisense
Sequence Source Affymetrix Proprietary Database