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[176330_at]

Description Y22D7AL.C /REP_DB=WormBase Gene ID /WP=CE23435 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 81      4grp_total > 48      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 320
1 2 3 4 range
A 35.2
(-3)
A 		195.2
(0.3)
P 		325.9
(3)
P 		35.5
(-3)
A 		291
B 57.7
(-2.8)
A 		257.5
(1.6)
P 		319.7
(3)
P 		49.8
(-3)
A 		270
C 5.6
(-3)
A 		251
(2.2)
P 		289.1
(3)
P 		53
(-2)
A 		284
avr 32.8
(-3) 		234.6
(1.3) 		311.6
(3) 		46.1
(-2.7) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 20.8
(-3)
A 		150
(-0.3)
P 		136.3
(-0.6)
P 		312.4
(3)
P 		182
(0.3)
P 		122.4
(-0.9)
P 		292
B 29.2
(-3)
A 		135
(-0.7)
P 		145.6
(-0.5)
P 		307.1
(3)
P 		305.6
(3)
P 		87.7
(-1.7)
P 		278
C 7.1
(-3)
A 		157.9
(-0.4)
P 		192.9
(0.2)
P 		356.4
(3)
P 		222.2
(0.7)
P 		109.2
(-1.2)
P 		349
avr 19
(-3) 		147.6
(-0.5) 		158.3
(-0.3) 		325.3
(3) 		236.6
(1.3) 		106.4
(-1.3) 		306
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 12.8
(-2.4)
A 		42.4
(-0.2)
P 		85.2
(3)
P 		5.2
(-3)
A 		80
B 18.4
(-2.3)
A 		63.6
(2)
P 		74.1
(3)
P 		10.6
(-3)
A 		64
C 1.8
(-3)
A 		72.2
(1.3)
P 		100.8
(3)
P 		8.9
(-2.6)
A 		99
avr 11
(-2.8) 		59.4
(0.9) 		86.7
(3) 		8.2
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 3.8
(-3)
A 		53.3
(0.9)
P 		29.7
(-0.9)
P 		79.2
(3)
P 		54.9
(1.1)
P 		29.8
(-0.9)
P 		75
B 10.2
(-3)
A 		44.9
(-1.2)
P 		35.4
(-1.7)
P 		81.4
(0.7)
P 		124.2
(3)
P 		32.7
(-1.8)
P 		114
C 2.6
(-3)
A 		48.2
(0.9)
P 		49.1
(1)
P 		71.7
(3)
P 		71.9
(3)
P 		36.6
(-0.1)
P 		69
avr 5.5
(-3) 		48.8
(0.3) 		38.1
(-0.5) 		77.4
(2.5) 		83.7
(3) 		33
(-0.9) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176330_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19005
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.C NCBI
Target Description Y22D7AL.C /REP_DB=WormBase Gene ID /WP=CE23435 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065036(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065036 NCBI Caenorhabditis elegans Y22D7AL.14 (Y22D7AL.14) mRNA, complete cds. 11/11 None
SNAP00000002273 ENSEMBL cdna:SNAP chromosome:CEL140:III:1653796:1656395:-1 11/11 None
GENEFINDER00000002283 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1653796:1659841:-1 11/11 None
Y22D7AL.14 ENSEMBL cdna:known chromosome:CEL140:III:1653796:1656395:-1 gene:Y22D7AL.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1653795-1656395(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AL.14
Entrez Gene 189507 Entrez gene
SwissProt Q965P2 EMBL-EBI
WormBase CE23435 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1629894_AT dm
DROSGENOME1:144624_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK84588 Hypothetical protein Y22D7AL.14 [Caenorhabditis elegans] ref|NP_497437.1| Y22D7AL.14 [Caenorhabditis elegans] 1.0E-155
blast AAK84588 Hypothetical protein Y22D7AL.14 [Caenorhabditis elegans] ref|NP_497437.1| Y22D7AL.14 [Caenorhabditis elegans] 1.0E-154
blast CAE69176 Hypothetical protein CBG15208 [Caenorhabditis briggsae] 1.0E-125
blast AAK84589 Hypothetical protein Y22D7AL.15 [Caenorhabditis elegans] ref|NP_497438.2| Y22D7AL.15 [Caenorhabditis elegans] 1.0E-37
blast AAF46663 CG9357-PA [Drosophila melanogaster] ref|NP_611542.2| CG9357-PA [Drosophila melanogaster] 1.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 5.5E-46
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 5.5E-46
Sequence
Target Sequence 
>C. ELEGANS:176330_AT
tcaagctttctgtggctgtatccgggccgccaactatttccagaaaagcttatgacgtgg
atgctctgaaaatgtacgctgatatggtccaaattatgaattacgatttccacgtgttca
acagatacagtaacccatttgtggggtttaatgctccgctgcatccgatgagagcagaaa
tttcagtgctcggggagatgaatgcggaagcttcaatgaaaacctggtacgacttgggcc
tcccgaggaatatttcatttttcggaatcccgacgtatgccagggcatttcagcttctaa
cacattatctgcataaaccgtacagccctgcaatcagagcacggcctgaaattactaatc
tgccagatgtgtgcatctttgctcaatccgggtactacacaacagtatggaatcatcacg
cacaggctccatatctctatggtgacgatggaatttgggtgtcctatgaaaaccagcaga
gcatccttgcaaaaatggcgtttgctcggaagctccaagtgggcggagtcatggtttttt
cgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGCTTTCTGTGGCTGTATCCGG 53 633 182 Antisense
TTGTGGGGTTTAATGCTCCGCTGCA 473 703 320 Antisense
TGAAAACCTGGTACGACTTGGGCCT 180 573 398 Antisense
GAATCCCGACGTATGCCAGGGCATT 460 325 446 Antisense
AGGGCATTTCAGCTTCTAACACATT 104 59 463 Antisense
CGTACAGCCCTGCAATCAGAGCACG 623 245 500 Antisense
GATGTGTGCATCTTTGCTCAATCCG 300 409 547 Antisense
GCTCAATCCGGGTACTACACAACAG 133 301 562 Antisense
GTATGGAATCATCACGCACAGGCTC 634 455 586 Antisense
AAATGGCGTTTGCTCGGAAGCTCCA 222 121 674 Antisense
TGGGCGGAGTCATGGTTTTTTCGAT 307 555 701 Antisense
Sequence Source Affymetrix Proprietary Database