[Home] | [Total List]

[176329_at]

Description Y71G12B.W /REP_DB=WormBase Gene ID /WP=CE26260 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 4grp_high_8_8 > 35      6grp_total > 07      4grp_total > 52      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 263.4
(3)
P 		236
(0.1)
P 		228
(-0.7)
P 		206
(-3)
P 		57
B 192.1
(1.6)
P 		217.3
(3)
P 		204.1
(2.3)
P 		107.9
(-3)
A 		109
C 220.8
(1.4)
P 		260.8
(3)
P 		151.5
(-1.5)
P 		115.2
(-3)
A 		146
avr 225.4
(2.2) 		238
(3) 		194.5
(0.3) 		143
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 304
1 2 3 4 5 6 range
A 344
(3)
P 		94.3
(-2.4)
P 		92.4
(-2.4)
P 		65.5
(-3)
A 		82.6
(-2.6)
A 		77.6
(-2.7)
A 		279
B 181.1
(3)
P 		124.5
(-0.4)
P 		87.9
(-2.7)
A 		111.2
(-1.3)
M 		82.5
(-3)
A 		89.3
(-2.6)
A 		99
C 220.4
(3)
P 		173.3
(1.4)
P 		40.2
(-3)
A 		90.2
(-1.3)
A 		60.3
(-2.3)
A 		86.1
(-1.5)
A 		180
avr 248.5
(3) 		130.7
(-1) 		73.5
(-3) 		89
(-2.5) 		75.1
(-2.9) 		84.3
(-2.6) 		175
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 95.9
(3)
P 		51.2
(-1.1)
P 		59.6
(-0.3)
P 		30.2
(-3)
P 		66
B 61.3
(3)
P 		53.7
(1.8)
P 		47.3
(0.8)
P 		23
(-3)
A 		38
C 73.1
(2.8)
P 		75
(3)
P 		52.8
(0.6)
P 		19.4
(-3)
A 		56
avr 76.8
(3) 		60
(1.1) 		53.2
(0.3) 		24.2
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 63.4
(3)
P 		33.5
(-0.8)
P 		20.1
(-2.6)
P 		16.6
(-3)
A 		24.9
(-1.9)
A 		18.9
(-2.7)
A 		47
B 63
(3)
P 		41.4
(-0.1)
P 		21.3
(-3)
A 		29.4
(-1.8)
M 		33.5
(-1.2)
A 		33.3
(-1.3)
A 		42
C 81.7
(3)
P 		52.9
(0.6)
P 		10.2
(-3)
A 		18.1
(-2.3)
A 		19.5
(-2.2)
A 		28.8
(-1.4)
A 		72
avr 69.4
(3) 		42.6
(-0.1) 		17.2
(-3) 		21.4
(-2.5) 		26
(-2) 		27
(-1.9) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176329_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18671
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.W NCBI
Target Description Y71G12B.W /REP_DB=WormBase Gene ID /WP=CE26260 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058485(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058485 NCBI Caenorhabditis elegans Y71G12B.11a (Y71G12B.11) mRNA, complete cds. 11/11 A 
GENEFINDER00000001829 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1721598:1740273:1 11/11 None
SNAP00000001789 ENSEMBL cdna:SNAP chromosome:CEL140:I:1733299:1740273:1 11/11 None
Y71G12B.11a ENSEMBL cdna:known chromosome:CEL140:I:1721598:1740640:1 gene:Y71G12B.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171736 2 1 NM_001026647 194260_x_at (11)
NM_058485 176329_at (11), 176650_s_at (11), 176656_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1721597-1740273(+) 99.65 100.0
Public Domain and Genome References
Ensembl Y71G12B.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73909 Hypothetical protein Y71G12B.11a [Caenorhabditis elegans] ref|NP_490886.2| Y71G12B.11a [Caenorhabditis elegans] gb|AAA74747.1| talin 0.0
blast AAK73910 Hypothetical protein Y71G12B.11b [Caenorhabditis elegans] ref|NP_001021818.1| Y71G12B.11b [Caenorhabditis elegans] 0.0
blast CAE74421 Hypothetical protein CBG22153 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002558 EMBL-EBI I/LWEQ domain 6.7E-107
Pfam IPR000299 EMBL-EBI Band 4.1 9.1E-36
Pfam IPR002558 EMBL-EBI I/LWEQ domain 6.7E-107
Sequence
Target Sequence 
>C. ELEGANS:176329_AT
acaacatcatcatctcggcgaaaggaatacttcacgccgtgcacacactcatgagatcag
cctcaaatgctcaacgagagctcgcgatgcaaggtcgagcggcggcaggcggcacaggta
cctatcaatggtctgaaggcctgatcagtgcggctcgtgtcgtcgtcgcctcggttcaca
agctgtgcgacgccgcgaatacgctgatgaagggacaaacgaccgaggaacgactcatct
cggctgccaaacaggtgtcttcgtcgacggcgcaacttttggtcgcgtgtaacgtgagag
ccgatcccgatagtcaggcgaatcggagattgcaggctgctgggcaggctgttaggaacg
ccgccgaacgcctagtacaatcagctcaacaagaaatgatcgcgcgcgacgatcggaaca
ttgcaatctcggaccgtctcgtcaacggaatcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACATCATCATCTCGGCGAAAGG 8 113 7163 Antisense
GCCGTGCACACACTCATGAGATCAG 539 283 7198 Antisense
TGAAGGCCTGATCAGTGCGGCTCGT 17 575 7296 Antisense
TCGCCTCGGTTCACAAGCTGTGCGA 571 597 7328 Antisense
TGCGACGCCGCGAATACGCTGATGA 544 583 7348 Antisense
GCCAAACAGGTGTCTTCGTCGACGG 498 277 7408 Antisense
ACGGCGCAACTTTTGGTCGCGTGTA 282 97 7429 Antisense
TAACGTGAGAGCCGATCCCGATAGT 168 637 7452 Antisense
TGGGCAGGCTGTTAGGAACGCCGCC 682 553 7503 Antisense
GAACGCCTAGTACAATCAGCTCAAC 275 347 7528 Antisense
CGGACCGTCTCGTCAACGGAATCGC 446 1 7592 Antisense
Sequence Source Affymetrix Proprietary Database