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[176328_at]

Description Y22D7AL.S /REP_DB=WormBase Gene ID /WP=CE26506 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 50      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 6.2
(-3)
A 		18.8
(3)
A 		17.8
(2.5)
A 		10.4
(-1)
A 		13
B 22.6
(-1.5)
A 		73.5
(3)
A 		38.9
(-0.1)
A 		5.5
(-3)
A 		68
C 8.5
(-2.8)
A 		49
(3)
A 		7.3
(-3)
A 		36.5
(1.2)
A 		42
avr 12.4
(-3) 		47.1
(3) 		21.3
(-1.5) 		17.5
(-2.1) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 15.8
(-1)
A 		11.5
(-2)
A 		32.4
(3)
A 		24.6
(1.1)
A 		7.8
(-2.9)
A 		7.5
(-3)
A 		25
B 24.2
(3)
A 		22.7
(2.4)
A 		20.7
(1.6)
A 		13.4
(-1.5)
A 		21.8
(2)
A 		9.7
(-3)
A 		15
C 30.6
(1.6)
A 		26.7
(0.8)
A 		10.3
(-2.9)
A 		34.6
(2.5)
A 		9.8
(-3)
A 		36.8
(3)
A 		27
avr 23.5
(2.6) 		20.3
(0.9) 		21.1
(1.3) 		24.2
(3) 		13.1
(-3) 		18
(-0.4) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.3
(-1.5)
A 		4.1
(1.9)
A 		4.7
(3)
A 		1.5
(-3)
A 		3
B 7.2
(-0.9)
A 		18.1
(3)
A 		9
(-0.2)
A 		1.2
(-3)
A 		17
C 2.8
(-2.8)
A 		14.1
(3)
A 		2.5
(-3)
A 		6.2
(-1.1)
A 		12
avr 4.1
(-2.3) 		12.1
(3) 		5.4
(-1.4) 		3
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.9
(-1.8)
A 		4.1
(-0.4)
A 		7.1
(3)
A 		6.2
(2)
A 		2.4
(-2.3)
A 		1.8
(-3)
A 		5
B 8.4
(2.5)
A 		7.6
(1.6)
A 		5
(-1.3)
A 		3.5
(-3)
A 		8.8
(3)
A 		3.6
(-2.9)
A 		5
C 11.3
(2.4)
A 		8.1
(0.4)
A 		2.6
(-3)
A 		7
(-0.3)
A 		3.2
(-2.6)
A 		12.3
(3)
A 		10
avr 7.5
(3) 		6.6
(1) 		4.9
(-2.8) 		5.6
(-1.2) 		4.8
(-3) 		5.9
(-0.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176328_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19004
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.S NCBI
Target Description Y22D7AL.S /REP_DB=WormBase Gene ID /WP=CE26506 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065029
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y22D7AL.4 ENSEMBL cdna:known chromosome:CEL140:III:1626628:1637550:1 gene:Y22D7AL.4 A 
GENEFINDER00000002281 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1626628:1630069:1 None
NM_065029 NCBI Caenorhabditis elegans Y22D7AL.4 (Y22D7AL.4) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1629515-1630351(+) 57.89 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AL.4
Entrez Gene 175317 Entrez gene
SwissProt Q965P9 EMBL-EBI
WormBase CE27243 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84593 Hypothetical protein Y22D7AL.4 [Caenorhabditis elegans] ref|NP_497430.1| Y22D7AL.4 [Caenorhabditis elegans] 0.0
blast AAK84593 Hypothetical protein Y22D7AL.4 [Caenorhabditis elegans] ref|NP_497430.1| Y22D7AL.4 [Caenorhabditis elegans] 2.0E-81
blast CAE66430 Hypothetical protein CBG11700 [Caenorhabditis briggsae] 5.0E-37
blast CAE66430 Hypothetical protein CBG11700 [Caenorhabditis briggsae] 4.0E-36
blast CAE66428 Hypothetical protein CBG11698 [Caenorhabditis briggsae] 3.0E-18
Sequence
Target Sequence 
>C. ELEGANS:176328_AT
ggcggagcctggcgataagggggcggagcctaatgccaaaattttcaaattcaaaaaaaa
aaaaattttttttcaaaaaaaatcaatatttcccaaaattccagcaaaacctctcaattt
ccggcaccgcaaaagtgtataacatcaacgaccccaccgatcatattaccctaaaatgca
caattctaatcgaagatccggttgccgagagagccgagaaaccggaggtggtggcaccga
cgagggatgagcagacgcagacagagagagaaaaattaagaaaagtggtggagaagggtg
ttcagcatttttcctttgttaggttttctgatatctctactccccgcggagatacaccgc
ttcaaagtttgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGGAGCCTGGCGATAAGGGGGCG 427 541 17 Antisense
AGGGGGCGGAGCCTAATGCCAAAAT 220 57 34 Antisense
ATTCCAGCAAAACCTCTCAATTTCC 683 7 114 Antisense
CTCTCAATTTCCGGCACCGCAAAAG 163 231 127 Antisense
AGTGTATAACATCAACGACCCCACC 487 57 150 Antisense
CCCACCGATCATATTACCCTAAAAT 67 257 169 Antisense
GATCCGGTTGCCGAGAGAGCCGAGA 566 411 211 Antisense
GGTGGCACCGACGAGGGATGAGCAG 238 499 246 Antisense
GTGTTCAGCATTTTTCCTTTGTTAG 629 485 314 Antisense
TAGGTTTTCTGATATCTCTACTCCC 285 655 336 Antisense
AGATACACCGCTTCAAAGTTTGATC 637 61 366 Antisense
Sequence Source Affymetrix Proprietary Database