[Home] | [Total List]

[176327_s_at]

Description Y47D7A.5 /REP_DB=WormBase Gene ID /WP=CE22065 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 54      6grp_total > 82      4grp_total > 49      6grp_cgc > 64      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3070
1 2 3 4 range
A 113.4
(-3)
P 		2730.3
(2.2)
P 		3159.2
(3)
P 		147.2
(-2.9)
P 		3046
B 89.6
(-3)
P 		2322.7
(1.8)
P 		2872.9
(3)
P 		193
(-2.8)
P 		2783
C 98.6
(-3)
P 		2457.9
(2.7)
P 		2598
(3)
P 		172.7
(-2.8)
P 		2499
avr 100.5
(-3) 		2503.6
(2.2) 		2876.7
(3) 		171
(-2.8) 		2776

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2267
1 2 3 4 5 6 range
A 197.5
(-3)
P 		2092.2
(2.7)
P 		1012.2
(-0.6)
P 		1619.3
(1.3)
P 		2203.5
(3)
P 		544
(-2)
P 		2006
B 181.8
(-3)
P 		1913.5
(1.6)
P 		1124.5
(-0.5)
P 		1667.5
(0.9)
P 		2448.5
(3)
P 		594.8
(-1.9)
P 		2267
C 191
(-3)
P 		1920.7
(2.7)
P 		1278.6
(0.6)
P 		2015
(3)
P 		2007.2
(3)
P 		586
(-1.7)
P 		1824
avr 190.1
(-3) 		1975.5
(2.3) 		1138.4
(-0.2) 		1767.3
(1.7) 		2219.7
(3) 		574.9
(-1.9) 		2030
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 884
1 2 3 4 range
A 41.3
(-2.9)
P 		592.7
(1.3)
P 		825.9
(3)
P 		21.5
(-3)
P 		804
B 28.6
(-3)
P 		573.6
(2.1)
P 		665.7
(3)
P 		41.1
(-2.9)
P 		637
C 32.6
(-3)
P 		706.7
(1.6)
P 		905.5
(3)
P 		29.1
(-3)
P 		876
avr 34.2
(-3) 		624.3
(1.6) 		799
(3) 		30.6
(-3) 		768

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 958
1 2 3 4 5 6 range
A 36.4
(-3)
P 		744.1
(3)
P 		220.4
(-1.4)
P 		410.7
(0.2)
P 		664.9
(2.3)
P 		132.5
(-2.2)
P 		708
B 63.3
(-3)
P 		636.9
(0.7)
P 		273.1
(-1.6)
P 		441.7
(-0.6)
P 		994.8
(3)
P 		221.8
(-2)
P 		932
C 70.8
(-3)
P 		586.1
(2.3)
P 		325.4
(-0.4)
P 		405.2
(0.5)
P 		649.5
(3)
P 		196.2
(-1.7)
P 		579
avr 56.8
(-3) 		655.7
(2) 		273
(-1.2) 		419.2
(0.1) 		769.7
(3) 		183.5
(-1.9) 		713
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176327_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15910
Sequence Type Exemplar sequence
Representative Public ID Y47D7A.5 NCBI
Target Description Y47D7A.5 /REP_DB=WormBase Gene ID /WP=CE22065 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071815(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071815 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-5) (grl-5) mRNA, complete cds. 11/11 None
SNAP00000043257 ENSEMBL cdna:SNAP chromosome:CEL140:V:4412693:4414392:-1 11/11 None
GENEFINDER00000043282 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4412693:4414389:-1 11/11 None
Y47D7A.5 ENSEMBL cdna:known chromosome:CEL140:V:4412577:4414419:-1 gene:Y47D7A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4412692-4414389(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grl-5
Ensembl Y47D7A.5
Entrez Gene 178837 Entrez gene
SwissProt Q9N3V3 EMBL-EBI
WormBase CE22065 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60638 Ground-like (grd related) protein 5 [Caenorhabditis elegans] ref|NP_504216.1| GRound-Like (grd related) family member (grl-5) [Caenorhabditis elegans] 4.0E-70
blast CAE56046 Hypothetical protein CBG23612 [Caenorhabditis briggsae] 3.0E-51
blast CAE56046 Hypothetical protein CBG23612 [Caenorhabditis briggsae] 1.0E-50
blast CAE58345 Hypothetical protein CBG01466 [Caenorhabditis briggsae] 5.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 6.9E-30
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 6.9E-30
Sequence
Target Sequence 
>C. ELEGANS:176327_S_AT
gaggaggatcctcctgtggatgctctgctccaccagcttgcccaccaccacctccaccat
ctccatgtggaggcggtggctatgctagagcctactctgctccaacattcaccgctggag
gagctggataccaacaacaaccacaatatcaaccacagcaatcatccttcggatcttcct
acgccgctccagcacctttcgccgctcagccagctcaatttgctgttcaatcagctccac
cacagccaatcgtcgctccaccaccacaagcatatgctgctccacacaagagacatgtgg
atgttatggatattgacactggagttgatcagtctgaaggatatgttgctcgtgtgaaga
gagaggagaatgtttttgatcccaaatgtaattctgaagatctcaaggctattattgtgg
ctaacatccacgaaagcactgccgtcgccaaacgtcaaatccagaccgccgccgctgatg
ctatcggtggacgcgttgacgtcatctgctcaaaaggaacattctcgtacatcgtgaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGAGGATCCTCCTGTGGATGCTC 22 405 71 Antisense
TGTGGAGGCGGTGGCTATGCTAGAG 123 555 136 Antisense
TATGCTAGAGCCTACTCTGCTCCAA 502 657 151 Antisense
CCAACATTCACCGCTGGAGGAGCTG 154 275 172 Antisense
ACAGCAATCATCCTTCGGATCTTCC 383 109 225 Antisense
CCGCTCAGCCAGCTCAATTTGCTGT 173 263 272 Antisense
GCATATGCTGCTCCACACAAGAGAC 81 309 340 Antisense
GTCGCCAAACGTCAAATCCAGACCG 308 295 514 Antisense
CGCCGCTGATGCTATCGGTGGACGC 112 255 540 Antisense
CGGTGGACGCGTTGACGTCATCTGC 126 245 555 Antisense
GGAACATTCTCGTACATCGTGAACA 440 529 586 Antisense
Sequence Source Affymetrix Proprietary Database