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[176326_s_at]

Description Y22D7AL.T /REP_DB=WormBase Gene ID /WP=CE26507 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 50      4grp_total > 37      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 93.1
(3)
A 		67.4
(-0.1)
A 		46.2
(-2.7)
A 		44
(-3)
A 		49
B 58.5
(3)
A 		37.4
(-2.1)
A 		33.6
(-3)
A 		38.8
(-1.7)
A 		25
C 60
(0.4)
P 		55.3
(-0)
M 		22
(-3)
A 		88.9
(3)
A 		67
avr 70.5
(3) 		53.4
(0.2) 		33.9
(-3) 		57.2
(0.8) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 40.9
(-3)
A 		72.3
(2.1)
A 		52.8
(-1.1)
A 		77.6
(3)
A 		43.5
(-2.6)
P 		61.1
(0.3)
A 		37
B 40.7
(3)
A 		29
(-0)
A 		38.4
(2.4)
M 		27.2
(-0.5)
A 		17.4
(-3)
A 		31.5
(0.6)
A 		23
C 63.8
(0.6)
A 		43.8
(-1.2)
A 		90.6
(3)
A 		89.2
(2.9)
A 		49
(-0.7)
P 		23.4
(-3)
A 		67
avr 48.5
(-0.5) 		48.4
(-0.5) 		60.6
(2.1) 		64.7
(3) 		36.6
(-3) 		38.7
(-2.6) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 33.9
(3)
A 		14.6
(-1.2)
A 		12.1
(-1.8)
A 		6.4
(-3)
A 		28
B 18.7
(3)
A 		9.2
(-2.2)
A 		7.8
(-3)
A 		8.3
(-2.7)
A 		11
C 19.9
(3)
P 		15.9
(1)
M 		7.7
(-3)
A 		15
(0.6)
A 		12
avr 24.2
(3) 		13.2
(-1.4) 		9.2
(-3) 		9.9
(-2.7) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 7.5
(-3)
A 		25.7
(3)
A 		11.5
(-1.7)
A 		19.7
(1)
A 		13.1
(-1.2)
P 		14.9
(-0.6)
A 		18
B 14.2
(3)
A 		9.7
(-0.8)
A 		9.3
(-1.1)
M 		7.2
(-2.9)
A 		7.1
(-3)
A 		11.7
(0.9)
A 		7
C 23.7
(3)
A 		13.4
(-0.9)
A 		23.1
(2.8)
A 		17.9
(0.8)
A 		15.9
(0.1)
P 		7.8
(-3)
A 		16
avr 15.1
(1.5) 		16.3
(3) 		14.6
(0.9) 		14.9
(1.3) 		12
(-2.4) 		11.5
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176326_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19010
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.T NCBI
Target Description Y22D7AL.T /REP_DB=WormBase Gene ID /WP=CE26507 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065029(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065029 NCBI Caenorhabditis elegans Y22D7AL.4 (Y22D7AL.4) mRNA, complete cds. 11/11 None
GENEFINDER00000002276 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1635784:1641724:1 11/11 None
Y22D7AL.4 ENSEMBL cdna:known chromosome:CEL140:III:1626628:1637550:1 gene:Y22D7AL.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002268 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1636125-1637550(+) 72.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AL.4
Entrez Gene 175317 Entrez gene
SwissProt Q965P9 EMBL-EBI
WormBase CE27243 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84593 Hypothetical protein Y22D7AL.4 [Caenorhabditis elegans] ref|NP_497430.1| Y22D7AL.4 [Caenorhabditis elegans] 0.0
blast AAK84593 Hypothetical protein Y22D7AL.4 [Caenorhabditis elegans] ref|NP_497430.1| Y22D7AL.4 [Caenorhabditis elegans] 1.0E-117
blast CAE66430 Hypothetical protein CBG11700 [Caenorhabditis briggsae] 4.0E-36
blast AAK84592 Hypothetical protein Y22D7AL.3 [Caenorhabditis elegans] ref|NP_497432.1| Y22D7AL.3 [Caenorhabditis elegans] 1.0E-31
blast CAE66428 Hypothetical protein CBG11698 [Caenorhabditis briggsae] 2.0E-18
blast CAE66428 Hypothetical protein CBG11698 [Caenorhabditis briggsae] 3.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000002276 1 354-376
Sequence
Target Sequence 
>C. ELEGANS:176326_S_AT
gagaaatctcttcagaatccacgtcatcagattctgaatctgagtctgaaagttctacag
actcagaaactactacaactactactaccaccaccactgagaattcctcggaaactgtga
gaaaaatcgatacgccaccggaagccgaaaataaagaggagagcataatcgagcacccat
tctctgcccgtgagcccccagagtctccgacaacggcatacatgaacaatttacggcaga
aaataaggcttgtaataaaaaaaaaaaactttgaaaaacgtatgaatagggcttccaggc
aggcgcggtttcagggcctcacgcctgcctccagcctgccttactctaaggtggtacatt
caccgcggccgacacttttcgggttcccctttacaggaggcgccccaaagccttcgcggc
aggcatttgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAATCTCTTCAGAATCCACGTC 196 393 74 Antisense
CTACAGACTCAGAAACTACTACAAC 421 227 128 Antisense
CCACCACCACTGAGAATTCCTCGGA 300 273 161 Antisense
GAAAAATCGATACGCCACCGGAAGC 447 355 194 Antisense
CAGAGTCTCCGACAACGGCATACAT 588 203 272 Antisense
GGCATACATGAACAATTTACGGCAG 415 537 288 Antisense
TATGAATAGGGCTTCCAGGCAGGCG 171 655 354 Antisense
TCCAGCCTGCCTTACTCTAAGGTGG 675 583 403 Antisense
CTAAGGTGGTACATTCACCGCGGCC 320 197 419 Antisense
CTTTACAGGAGGCGCCCCAAAGCCT 318 197 462 Antisense
AAAGCCTTCGCGGCAGGCATTTGCC 280 125 480 Antisense
Sequence Source Affymetrix Proprietary Database