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[176325_at]

Description Y19D10A.O /REP_DB=WormBase Gene ID /WP=CE21451 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 90      4grp_total > 08      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 14.6
(-3)
A 		16.4
(-2.6)
A 		40.1
(3)
A 		30
(0.6)
A 		26
B 15.3
(1.7)
A 		4.6
(-3)
A 		16.8
(2.4)
A 		18.2
(3)
A 		14
C 8.7
(-3)
A 		21.2
(-1)
A 		12.5
(-2.4)
A 		46.9
(3)
P 		38
avr 12.9
(-3) 		14.1
(-2.6) 		23.1
(0.3) 		31.7
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 21
(1.2)
A 		1.3
(-3)
A 		1.4
(-3)
A 		11.1
(-0.9)
A 		29.2
(3)
A 		1.8
(-2.9)
A 		28
B 0.8
(-3)
A 		24.7
(3)
A 		16
(0.8)
A 		21.2
(2.1)
A 		22.1
(2.3)
A 		24.3
(2.9)
A 		24
C 36.7
(3)
A 		13.8
(-0.9)
A 		4.4
(-2.4)
A 		24.1
(0.9)
A 		1.1
(-3)
A 		13.2
(-1)
A 		36
avr 19.5
(3) 		13.3
(-0) 		7.3
(-3) 		18.8
(2.7) 		17.5
(2) 		13.1
(-0.1) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.3
(-1.5)
A 		3.6
(-3)
A 		10.5
(3)
A 		4.4
(-2.3)
A 		7
B 4.9
(3)
A 		1.1
(-3)
A 		3.9
(1.4)
A 		3.9
(1.4)
A 		4
C 2.9
(-3)
A 		6.1
(0.8)
A 		4.4
(-1.2)
A 		7.9
(3)
P 		5
avr 4.4
(-1.2) 		3.6
(-3) 		6.3
(3) 		5.4
(1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.9
(-0.5)
A 		0.5
(-2.9)
A 		0.3
(-3)
A 		2.8
(-1.2)
A 		8.8
(3)
A 		0.4
(-2.9)
A 		9
B 0.3
(-3)
A 		8.2
(2.4)
A 		3.9
(-0.5)
A 		5.6
(0.6)
A 		9
(2.9)
A 		9.1
(3)
A 		9
C 13.6
(3)
A 		4.2
(-1.3)
A 		1.1
(-2.7)
A 		4.8
(-1)
A 		0.4
(-3)
A 		4.4
(-1.2)
A 		13
avr 5.9
(2.7) 		4.3
(0.5) 		1.8
(-3) 		4.4
(0.6) 		6.1
(3) 		4.6
(0.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176325_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19476
Sequence Type Exemplar sequence
Representative Public ID Y19D10A.O NCBI
Target Description Y19D10A.O /REP_DB=WormBase Gene ID /WP=CE21451 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000008437 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2494063:2513096:1 11/11 None
GENEFINDER00000029978 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2385784:2404817:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Y19D10A.3 8/11 Cross Hyb Matching Probes None
C01B4.4 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2398674-2400954(+) 83.33 100.0
chrV:2506953-2509233(+) 83.33 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503657 Y19D10A.4 [Caenorhabditis elegans] gb|AAK68417.1| Hypothetical protein Y19D10A.4 [Caenorhabditis elegans] 0.0
blast AAD14699 Hypothetical protein C01B4.7 [Caenorhabditis elegans] ref|NP_503683.1| C01B4.7 [Caenorhabditis elegans] 0.0
blast AAD14695 Seven tm receptor protein 258 [Caenorhabditis elegans] ref|NP_503686.1| Seven TM Receptor family member (str-258) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.7E-9
Pfam IPR008183 EMBL-EBI Aldose 1-epimerase 2.0E-113
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008437 25 39-61,92-114,119-141,151-173,180-202,212-231,272-294,309-328,341-363,367-389,402-424,955-977,989-1011,1039-1061,1082-1099,1134-1156,1184-1206,1278-1300,1378-1400,1413-1430,1459-1481,1501-1523,1575-1597,1628-1650,1657-1679
GENEFINDER00000029978 25 39-61,92-114,119-141,151-173,180-202,212-231,272-294,309-328,341-363,367-389,402-424,955-977,989-1011,1039-1061,1082-1099,1134-1156,1184-1206,1278-1300,1378-1400,1413-1430,1459-1481,1501-1523,1575-1597,1628-1650,1657-1679
Sequence
Target Sequence 
>C. ELEGANS:176325_AT
aattctcatcacatttgcatgacaatcaatacattggcatgcgctacagcgacactgtac
gtgccaataattggcagttactggaagcatgttgctatgaaaatattgaattctactatt
tcatctagcatttctagtcagacccgaatcatgctgaagacattgatcaagggtctaact
tttcaagttatcttaccacttgtctgctatgttcctgttacttttatgtattgttggaat
aagtattctggtaaggaaattcaggtacttatgggtttcgttccccccaaaatgttcatt
caattatttaatactgaatttttaattttaatccacacgccatatcttgagccgccaaaa
cttttttggcaagttttcaatatgcttcattgtgaaattcggtcttttcagacaatttcg
agcgatcaaatcctaatatcccaatacactctggcatttatgggtacacttccgtgtatt
ttcgatccgctacttcaaatgtattttatattgccttaccgaaagacgatccagaatttt
gttgcatgtgtttcatttagaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTCATCACATTTGCATGACAA 436 177 337 Antisense
ATACATTGGCATGCGCTACAGCGAC 683 23 365 Antisense
ACAGCGACACTGTACGTGCCAATAA 582 107 382 Antisense
TAGCATTTCTAGTCAGACCCGAATC 89 649 462 Antisense
AGACCCGAATCATGCTGAAGACATT 133 71 476 Antisense
TAATCCACACGCCATATCTTGAGCC 219 637 665 Antisense
ATCTTGAGCCGCCAAAACTTTTTTG 7 19 680 Antisense
GTCTTTTCAGACAATTTCGAGCGAT 605 467 738 Antisense
AATCCTAATATCCCAATACACTCTG 228 167 765 Antisense
GACGATCCAGAATTTTGTTGCATGT 696 377 861 Antisense
GTTGCATGTGTTTCATTTAGACCAA 430 439 877 Antisense
Sequence Source Affymetrix Proprietary Database