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[176324_at]

Description Y22D7AL.L /REP_DB=WormBase Gene ID /WP=CE26499 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 60      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 61.9
(-3)
A 		164
(3)
A 		143.2
(1.8)
A 		100.3
(-0.7)
A 		102
B 113.4
(-1.8)
A 		166.6
(3)
A 		128.1
(-0.5)
A 		100
(-3)
A 		67
C 110.6
(-3)
A 		143.4
(1.7)
A 		152.3
(3)
P 		127.6
(-0.6)
A 		42
avr 95.3
(-3) 		158
(3) 		141.2
(1.4) 		109.3
(-1.7) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 123.7
(-1.2)
A 		136.3
(-0.7)
P 		101.5
(-2.2)
A 		222.2
(3)
P 		129.8
(-1)
A 		82
(-3)
A 		140
B 92.6
(-0.6)
A 		94.7
(-0.4)
A 		145.3
(3)
A 		122.9
(1.5)
A 		84.9
(-1.1)
A 		57
(-3)
A 		88
C 134.9
(1.3)
P 		125.5
(0.6)
A 		143.6
(1.9)
P 		160.3
(3)
A 		72.3
(-3)
A 		79.5
(-2.5)
A 		88
avr 117.1
(-0.2) 		118.8
(-0.1) 		130.1
(0.6) 		168.5
(3) 		95.7
(-1.6) 		72.8
(-3) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 22.5
(-0.9)
A 		35.6
(2.5)
A 		37.4
(3)
A 		14.7
(-3)
A 		23
B 36.2
(1.5)
A 		41.2
(3)
A 		29.7
(-0.5)
A 		21.3
(-3)
A 		20
C 36.6
(-0.1)
A 		41.2
(0.7)
A 		53.1
(3)
P 		21.5
(-3)
A 		32
avr 31.8
(0.6) 		39.3
(2.8) 		40.1
(3) 		19.2
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 22.8
(-2.5)
A 		48.5
(1.7)
P 		22.1
(-2.7)
A 		56.4
(3)
P 		39.2
(0.2)
A 		20
(-3)
A 		36
B 32.2
(1.7)
A 		31.5
(1.4)
A 		35.3
(3)
A 		32.6
(1.9)
A 		34.5
(2.7)
A 		21.2
(-3)
A 		14
C 50
(3)
P 		38.3
(0.4)
A 		36.6
(-0)
P 		32.2
(-1)
A 		23.4
(-3)
A 		26.6
(-2.3)
A 		27
avr 35
(1.2) 		39.4
(2.7) 		31.3
(-0.1) 		40.4
(3) 		32.4
(0.3) 		22.6
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176324_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19029
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.L NCBI
Target Description Y22D7AL.L /REP_DB=WormBase Gene ID /WP=CE26499 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065026(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065026 NCBI Caenorhabditis elegans Y22D7AL.9 (Y22D7AL.9) mRNA, complete cds. 11/11 None
GENEFINDER00000002277 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1600808:1616822:-1 11/11 None
Y22D7AL.9 ENSEMBL cdna:known chromosome:CEL140:III:1606834:1614022:-1 gene:Y22D7AL.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002264 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1611174-1615912(-) 79.92 93.37
Public Domain and Genome References
Gene Title
Ensembl Y22D7AL.9
Entrez Gene 175314 Entrez gene
SwissProt Q965Q2 EMBL-EBI
WormBase CE37423 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84598 Hypothetical protein Y22D7AL.9 [Caenorhabditis elegans] ref|NP_497427.2| Y22D7AL.9 [Caenorhabditis elegans] 0.0
blast CAE66433 Hypothetical protein CBG11703 [Caenorhabditis briggsae] 0.0
blast XP_397392 PREDICTED: similar to ENSANGP00000002840 [Apis mellifera] 6.0E-20
blast XP_397392 PREDICTED: similar to ENSANGP00000002840 [Apis mellifera] 9.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 0.059
Pfam IPR001440 EMBL-EBI TPR repeat 0.21
Sequence
Target Sequence 
>C. ELEGANS:176324_AT
ggtcgttggacctgaatctggaatcagtgaagctccaggaatcagcatttggagcacttg
catccgcctattgctccattcaaaaatacgaggacgcgctgtttttcacccaaaaacaac
tggaaattgcgatgaaaatggacaccccatcaatttcaataattcgagagaacctggcaa
ctattgcggagctctgtgagaattttcaagtggcaattgaacagagaaggattttatcga
gaaatgggaatatgccggaaatcctgaaactttgtggcctctacctgaaaaccggcgccc
cggagcagattttcacggtcctaaacttcaaaattccacctgaaacctcagaatttcacg
tagaaatctgtcagctcataggaaaagcccatcatctccaaggagatcaaaaaatggctc
tgcggacgctaattccgctgtcgagaaaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCGTTGGACCTGAATCTGGAATC 421 471 926 Antisense
TCCGCCTATTGCTCCATTCAAAAAT 120 597 988 Antisense
AATACGAGGACGCGCTGTTTTTCAC 423 171 1010 Antisense
TGGACACCCCATCAATTTCAATAAT 586 545 1064 Antisense
GGCAACTATTGCGGAGCTCTGTGAG 384 535 1101 Antisense
AAATCCTGAAACTTTGTGGCCTCTA 13 119 1184 Antisense
TTGTGGCCTCTACCTGAAAACCGGC 636 703 1197 Antisense
GCAGATTTTCACGGTCCTAAACTTC 54 311 1230 Antisense
AGGAAAAGCCCATCATCTCCAAGGA 654 53 1305 Antisense
AAATGGCTCTGCGGACGCTAATTCC 161 121 1337 Antisense
CGCTAATTCCGCTGTCGAGAAACCC 462 255 1352 Antisense
Sequence Source Affymetrix Proprietary Database