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[176323_at]

Description Y38F2AR.K /REP_DB=WormBase Gene ID /WP=CE26518 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 61      4grp_high_8_8 > 12      6grp_total > 40      4grp_total > 14      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 85.3
(0.2)
P 		74.7
(-2.8)
P 		95.4
(3)
A 		73.8
(-3)
A 		22
B 109.8
(3)
P 		58.4
(-0.9)
P 		65.2
(-0.4)
A 		31.7
(-3)
A 		78
C 53
(-2.6)
P 		75.1
(-1.5)
A 		45.9
(-3)
P 		163.9
(3)
P 		118
avr 82.7
(1) 		69.4
(-2.8) 		68.8
(-3) 		89.8
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 49.6
(-0.6)
P 		69.9
(3)
A 		36.2
(-3)
A 		47.7
(-1)
A 		36.2
(-3)
A 		44.8
(-1.5)
A 		34
B 49.7
(0.1)
P 		54.5
(1.4)
P 		48.5
(-0.2)
A 		60.7
(3)
A 		37.6
(-3)
P 		47.9
(-0.3)
P 		23
C 61
(1.9)
A 		61.6
(2)
A 		60.1
(1.8)
P 		68.2
(3)
P 		29.4
(-2.7)
A 		27.5
(-3)
A 		41
avr 53.4
(1.1) 		62
(3) 		48.3
(0) 		58.9
(2.3) 		34.4
(-3) 		40.1
(-1.8) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 31.1
(3)
P 		16.2
(-1.4)
P 		24.9
(1.2)
A 		10.8
(-3)
A 		20
B 35
(3)
P 		14.4
(-1.4)
P 		15.1
(-1.2)
A 		6.8
(-3)
A 		28
C 17.5
(-2.2)
P 		21.6
(-0.1)
A 		16
(-3)
P 		27.6
(3)
P 		12
avr 27.9
(3) 		17.4
(-1.9) 		18.7
(-1.3) 		15.1
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.1
(-2.6)
P 		24.9
(3)
A 		7.9
(-3)
A 		12.1
(-1.5)
A 		10.9
(-1.9)
A 		10.9
(-1.9)
A 		17
B 17.3
(2.2)
P 		18.1
(3)
P 		11.8
(-3)
A 		16.1
(1.1)
A 		15.3
(0.3)
P 		17.9
(2.8)
P 		6
C 22.6
(3)
A 		18.8
(1.3)
A 		15.3
(-0.3)
P 		13.7
(-1)
P 		9.5
(-2.9)
A 		9.2
(-3)
A 		13
avr 16.3
(0.1) 		20.6
(3) 		11.7
(-3) 		14
(-1.4) 		11.9
(-2.9) 		12.7
(-2.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176323_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19182
Sequence Type Exemplar sequence
Representative Public ID Y38F2AR.K NCBI
Target Description Y38F2AR.K /REP_DB=WormBase Gene ID /WP=CE26518 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067793(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067793 NCBI Caenorhabditis elegans Y38F2AR.5 (Y38F2AR.5) mRNA, complete cds. 11/11 None
SNAP00000033663 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2369011:2387919:1 10/11 None
GENEFINDER00000033680 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2369011:2381940:1 11/11 None
Y38F2AR.5 ENSEMBL cdna:known chromosome:CEL140:IV:2358930:2376001:1 gene:Y38F2AR.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182459 1/11 Cross Hyb Matching Probes None
NM_182460 6/11 Cross Hyb Matching Probes None
GENEFINDER00000029402 1/11 Cross Hyb Matching Probes None
SNAP00000029400 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029401 6/11 Cross Hyb Matching Probes None
VY35H6BL.2 1/11 Cross Hyb Matching Probes None
VY35H6BL.1 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl Y38F2AR.5
Entrez Gene 177024 Entrez gene
SwissProt Q60F70 EMBL-EBI
WormBase CE37565 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.26642.1.S1_AT similar to General transcription factor 3C polypeptide 1 (Transcription factor IIIC-alpha subunit) (TF3C-alpha) (TFIIIC 220 kDa subunit) (TFIIIC220) (TFIIIC box B-binding subunit) cfa
DROSOPHILA_2:1628132_AT dm
DROSGENOME1:141219_AT dm
CHICKEN:GGAAFFX.5574.1.S1_AT similar to Transcription factor (TFIIIC) alpha chain, partial gga
CHICKEN:GGAAFFX.5574.2.S1_AT similar to Transcription factor (TFIIIC) alpha chain, partial gga
CHICKEN:GGAAFFX.5574.2.S1_S_AT similar to Transcription factor (TFIIIC) alpha chain, partial gga
CHICKEN:GGAAFFX.5574.3.S1_S_AT similar to Transcription factor (TFIIIC) alpha chain, partial gga
HG-U133A:202320_AT general transcription factor IIIC, polypeptide 1, alpha 220kDa hs
HG-U133_PLUS_2:202320_AT general transcription factor IIIC, polypeptide 1, alpha 220kDa hs
HG-U133A_2:202320_AT general transcription factor IIIC, polypeptide 1, alpha 220kDa hs
HU35KSUBB:RC_AA233290_AT general transcription factor IIIC, polypeptide 1, alpha 220kDa hs
HUGENEFL:U02619_AT general transcription factor IIIC, polypeptide 1, alpha 220kDa hs
U133_X3P:G4753160_3P_S_AT general transcription factor IIIC, polypeptide 1, alpha 220kDa hs
U133_X3P:35671_3P_AT general transcription factor IIIC, polypeptide 1, alpha 220kDa hs
HG-U133A_2:35671_AT general transcription factor IIIC, polypeptide 1, alpha 220kDa hs
HG-FOCUS:35671_AT general transcription factor IIIC, polypeptide 1, alpha 220kDa hs
HG-U133_PLUS_2:35671_AT general transcription factor IIIC, polypeptide 1, alpha 220kDa hs
HG-U133A:35671_AT general transcription factor IIIC, polypeptide 1, alpha 220kDa hs
HG-U95AV2:35671_AT general transcription factor IIIC, polypeptide 1, alpha 220kDa hs
U133_X3P:4871719C_3P_AT General transcription factor IIIC, polypeptide 1, alpha 220kDa hs
HG-U133_PLUS_2:239540_AT General transcription factor IIIC, polypeptide 1, alpha 220kDa hs
HG-U133B:239540_AT General transcription factor IIIC, polypeptide 1, alpha 220kDa hs
HG-U95D:80496_AT General transcription factor IIIC, polypeptide 1, alpha 220kDa hs
U133_X3P:HS.148935.0.A1_3P_AT General transcription factor IIIC, polypeptide 1, alpha 220kDa hs
MU11KSUBA:R75469_RC_S_AT general transcription factor III C 1 mm
MG-U74AV2:97354_AT general transcription factor III C 1 mm
MG-U74BV2:112185_AT general transcription factor III C 1 mm
MOE430A:1434066_AT general transcription factor III C 1 mm
MOUSE430A_2:1434066_AT general transcription factor III C 1 mm
MOUSE430_2:1434066_AT general transcription factor III C 1 mm
MOE430B:1456024_AT general transcription factor III C 1 mm
MOUSE430_2:1456024_AT general transcription factor III C 1 mm
MOE430B:1438425_AT general transcription factor III C 1 mm
MOUSE430_2:1438425_AT general transcription factor III C 1 mm
MOE430B:1459673_AT general transcription factor III C 1 mm
MOUSE430_2:1459673_AT general transcription factor III C 1 mm
MU19KSUBA:TC17630_AT General transcription factor III C 1, mRNA (cDNA clone IMAGE:5325126) mm
MU19KSUBC:TC37625_AT General transcription factor III C 1, mRNA (cDNA clone IMAGE:5325126) mm
RG-U34A:L28801_AT general transcription factor III C 1 rn
RG-U34A:L28801_G_AT general transcription factor III C 1 rn
RAE230A:1370231_AT general transcription factor III C 1 rn
RAT230_2:1370231_AT general transcription factor III C 1 rn
RAE230B:1395486_AT general transcription factor III C 1 rn
RAT230_2:1395486_AT general transcription factor III C 1 rn
Protein Similarities
Method ID Description E-Value
blast NP_500194 Y38F2AR.5 [Caenorhabditis elegans] gb|AAU87815.1| Hypothetical protein Y38F2AR.5 [Caenorhabditis elegans] 0.0
blast CAE70297 Hypothetical protein CBG16818 [Caenorhabditis briggsae] 0.0
blast CAA84584 putative transposase [Caenorhabditis elegans] ref|NP_001023457.1| Y38F2AR.4 [Caenorhabditis elegans] gb|AAA20582.1| putative transposase [Caenorhabditis elegans] gb|AAU87814.1| Hypothetical protein Y38F2AR.4 [Caenorhabditis elegans] 0.0
blast AAB94140 Hypothetical protein M116.3 [Caenorhabditis elegans] ref|NP_501429.2| M116.3 [Caenorhabditis elegans] 0.0
blast T16863 hypothetical protein T13C2.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004906 EMBL-EBI Tc5 transposase 2.5E-70
Pfam IPR004906 EMBL-EBI Tc5 transposase 2.3E-41
Pfam IPR007350 EMBL-EBI Tc5 transposase, C-terminal 2.0E-37
Pfam IPR004875 EMBL-EBI CENP-B protein 2.6E-74
Pfam IPR004906 EMBL-EBI Tc5 transposase 1.0E-126
Pfam IPR007350 EMBL-EBI Tc5 transposase, C-terminal 5.7E-39
Pfam IPR004875 EMBL-EBI CENP-B protein 2.6E-74
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000033663 3 1221-1243,1281-1303,1327-1349
Sequence
Target Sequence 
>C. ELEGANS:176323_AT
gctcgccgactctgatattgttagaacctcatcaaatccgctcaaagtcgaatatccgcc
gatcaagaagtttggcggcaccaatgcgccgaaatccaatcgaaatacgcaaaagactgc
tcgtcaaatcccaaaaaagcgaaaattggatagtgtggatattgtcagctcgtcggcccg
tgtcagtgtccgctgccgttttacacccaaggaacgcgaccaactaatcatgattcgggc
cgtcggcttcttcttgaatccggtctatcgtttctggttggatccaacagttcttcgtga
tttgatgcatgaattcgtaccggaaagccgaaataagacggtccaaagcctgatggcttg
tggagttcgtgagcttgttcgggccaatcgtctggcctatttgcagcgggttgtccggaa
tttgtccacttttccgagtgtcttggtccatcaaatgaatgctggacaacccgagaagat
tttggatcaaattccgcctgccgtgctccaatctgtgctccaaagccttcgaactgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCGCCGACTCTGATATTGTTAGA 486 299 1803 Antisense
TTAGAACCTCATCAAATCCGCTCAA 163 681 1823 Antisense
GTTTGGCGGCACCAATGCGCCGAAA 628 451 1872 Antisense
AGTGTGGATATTGTCAGCTCGTCGG 599 59 1954 Antisense
TTACACCCAAGGAACGCGACCAACT 532 683 2003 Antisense
TAATCATGATTCGGGCCGTCGGCTT 237 635 2027 Antisense
TCGGCTTCTTCTTGAATCCGGTCTA 648 605 2045 Antisense
AATCCGGTCTATCGTTTCTGGTTGG 543 167 2059 Antisense
CAATCGTCTGGCCTATTTGCAGCGG 85 183 2187 Antisense
TTTCCGAGTGTCTTGGTCCATCAAA 164 671 2233 Antisense
TGTGCTCCAAAGCCTTCGAACTGAC 465 555 2316 Antisense
Sequence Source Affymetrix Proprietary Database