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[176322_at]

Description Y22D7AL.Y /REP_DB=WormBase Gene ID /WP=CE23427 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 85      4grp_total > 39      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 7.4
(-1.1)
A 		3.3
(-3)
A 		7.9
(-0.8)
A 		16
(3)
A 		13
B 21.9
(3)
A 		3.4
(-3)
A 		5.2
(-2.4)
A 		7.1
(-1.8)
A 		19
C 13.1
(3)
A 		10.2
(1.3)
A 		3.4
(-2.5)
A 		2.6
(-3)
A 		11
avr 14.1
(3) 		5.6
(-2.9) 		5.5
(-3) 		8.6
(-0.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 20.4
(0.5)
A 		14
(-1.3)
A 		7.6
(-3)
A 		14.4
(-1.2)
A 		29.7
(3)
A 		17.5
(-0.3)
A 		22
B 7.4
(-2.5)
A 		4.9
(-3)
A 		5.8
(-2.8)
A 		32.8
(2.8)
A 		6.2
(-2.7)
A 		33.8
(3)
A 		29
C 3.2
(-2.8)
A 		22.4
(3)
A 		7.2
(-1.6)
A 		8.5
(-1.2)
A 		2.4
(-3)
A 		10.1
(-0.7)
A 		20
avr 10.3
(-1.5) 		13.8
(0) 		6.9
(-3) 		18.6
(2.2) 		12.8
(-0.4) 		20.5
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.7
(3)
A 		0.7
(-3)
A 		2.1
(1.2)
A 		2.3
(1.8)
A 		2
B 7
(3)
A 		0.8
(-3)
A 		1.2
(-2.6)
A 		1.5
(-2.3)
A 		6
C 4.4
(3)
A 		2.9
(0.8)
A 		1.2
(-1.8)
A 		0.4
(-3)
A 		4
avr 4.7
(3) 		1.5
(-2.8) 		1.5
(-2.8) 		1.4
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 3.8
(-1.3)
A 		5
(-0.3)
A 		1.7
(-3)
A 		3.7
(-1.4)
A 		9
(3)
A 		4.3
(-0.9)
A 		7
B 2.6
(-2.4)
A 		1.6
(-2.9)
A 		1.4
(-3)
A 		8.7
(0.9)
A 		2.5
(-2.4)
A 		12.6
(3)
A 		11
C 1.2
(-2.6)
A 		6.8
(3)
A 		1.8
(-2)
A 		1.7
(-2.1)
A 		0.8
(-3)
A 		3.4
(-0.4)
A 		6
avr 2.5
(-2) 		4.5
(0.3) 		1.6
(-3) 		4.7
(0.6) 		4.1
(-0.1) 		6.8
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176322_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19040
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.Y NCBI
Target Description Y22D7AL.Y /REP_DB=WormBase Gene ID /WP=CE23427 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y22D7AL.Y
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y22D7AL.Y Y22D7AL.Y /REP_DB=WormBase Gene ID /WP=CE23427 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1664809-1665288(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176322_AT
taaatacactgccggggactcgaacccgcgacctttttcacagaggtcaaacctcttacc
cactgcgccacggcgcccattacgcgcagcagcagcgcctggctcggcgtaccggtggcg
cagtcggtaacagggctggttttggtgaaaaggtcaggggttcgagcccccgctgggaca
aatcttgcttaccttttcttatagtccttcttagttctgcgattatcctcgctgctgctc
attttggcaccttggcagaaataagagaaaaaaggggaattcgtaaagcaacaaagctga
caacaaaaataaaaagaagttggagcttttccttcggggagagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAATACACTGCCGGGGACTCGAAC 4 639 23 Antisense
CCCGCGACCTTTTTCACAGAGGTCA 426 259 47 Antisense
CAGAGGTCAAACCTCTTACCCACTG 242 205 63 Antisense
CGTACCGGTGGCGCAGTCGGTAACA 575 187 130 Antisense
GGCGCAGTCGGTAACAGGGCTGGTT 533 535 139 Antisense
CCGCTGGGACAAATCTTGCTTACCT 368 263 192 Antisense
TTGCTTACCTTTTCTTATAGTCCTT 54 705 207 Antisense
TATAGTCCTTCTTAGTTCTGCGATT 142 661 222 Antisense
TAGTTCTGCGATTATCCTCGCTGCT 299 653 234 Antisense
GCTGCTCATTTTGGCACCTTGGCAG 579 295 256 Antisense
TGGAGCTTTTCCTTCGGGGAGAGGA 465 549 343 Antisense
Sequence Source Affymetrix Proprietary Database