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[176320_at]

Description Y22D7AL.H /REP_DB=WormBase Gene ID /WP=CE26495 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 44      4grp_total > 0      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 26.6
(-3)
A 		54
(-1.2)
A 		46.4
(-1.7)
A 		117.6
(3)
A 		91
B 41.6
(-0.5)
A 		33.8
(-1.7)
A 		63
(3)
A 		25.8
(-3)
A 		37
C 60.8
(3)
A 		30.8
(-3)
A 		39.7
(-1.2)
A 		56.7
(2.2)
A 		30
avr 43
(-2.2) 		39.5
(-3) 		49.7
(-0.8) 		66.7
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 39
(2.6)
A 		16.3
(-3)
A 		34.8
(1.5)
A 		29
(0.1)
A 		37.7
(2.3)
A 		40.7
(3)
A 		24
B 46.4
(1)
M 		45.5
(0.8)
A 		61.3
(3)
P 		17.5
(-3)
A 		42.1
(0.4)
A 		38.6
(-0.1)
A 		44
C 37.4
(-0.3)
A 		74
(3)
P 		62.8
(2)
A 		41.8
(0.1)
A 		6.5
(-3)
A 		34.8
(-0.5)
A 		68
avr 40.9
(-0) 		45.3
(1.1) 		53
(3) 		29.4
(-2.9) 		28.8
(-3) 		38
(-0.7) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.7
(-3)
A 		11.7
(-1.4)
A 		12.1
(-1.1)
A 		17.2
(3)
A 		8
B 13.3
(2.1)
A 		8.3
(-1.2)
A 		14.6
(3)
A 		5.5
(-3)
A 		9
C 20.1
(3)
A 		8.9
(-3)
A 		13.8
(-0.4)
A 		9.6
(-2.6)
A 		11
avr 14.4
(3) 		9.6
(-3) 		13.5
(1.9) 		10.8
(-1.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 7.2
(-1.5)
A 		5.8
(-3)
A 		7.6
(-1.1)
A 		7.4
(-1.3)
A 		11.4
(3)
A 		9.9
(1.4)
A 		6
B 16.2
(2.6)
M 		15.1
(2)
A 		14.9
(1.9)
P 		4.6
(-3)
A 		17.1
(3)
A 		14.4
(1.7)
A 		13
C 13.9
(0.5)
A 		22.6
(3)
P 		16
(1.1)
A 		8.4
(-1.2)
A 		2.1
(-3)
A 		11.6
(-0.2)
A 		21
avr 12.4
(1.4) 		14.5
(3) 		12.8
(1.7) 		6.8
(-3) 		10.2
(-0.4) 		12
(1.1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176320_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18996
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.H NCBI
Target Description Y22D7AL.H /REP_DB=WormBase Gene ID /WP=CE26495 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000002266 ENSEMBL cdna:SNAP chromosome:CEL140:III:1617364:1624304:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065028 9/11 Negative Strand Matching Probes A 
GENEFINDER00000002278 11/11 Negative Strand Matching Probes None
Y22D7AL.5.3 9/11 Negative Strand Matching Probes None
Y22D7AL.5.2 9/11 Negative Strand Matching Probes None
Y22D7AL.5.1 9/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1620956-1625853(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84584 Hypothetical protein Y22D7AL.10 [Caenorhabditis elegans] ref|NP_497428.1| Y22D7AL.10 [Caenorhabditis elegans] 7.0E-49
blast CAE66432 Hypothetical protein CBG11702 [Caenorhabditis briggsae] 7.0E-48
blast AAH68628 MGC79030 protein [Xenopus laevis] 1.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR001476 EMBL-EBI Chaperonin Cpn10 2.1E-42
Sequence
Target Sequence 
>C. ELEGANS:176320_AT
ggagtttcaacgctggttttcgacaaaatttgcagtttttcgcttcttgtcgtctgtacc
ttaagtctattaagaacaagagtggtaagagcctctccatcaacatcctcggcaatgata
accaatggacggcggagcttgttggcgagctcaagagccggcacaatatcctgaacttgg
ctgatcttcttctcgctcaacaagacaagagccttctcgtactcgactttagctcctttc
gcagaggtgataaagtacggcgagatgtatcctctgtcgaacttcattccctcgataagc
tcgagctcatcgttcagcgtttttccgtccttaacagtgatgactccagtggttccgacc
ttcttcatggcgtcactgatgagatttccgacgacggtgtctccattggcggaaattgtg
gcgacttgagcgatctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTTTCAACGCTGGTTTTCGACA 428 515 704 Antisense
CTTCTTGTCGTCTGTACCTTAAGTC 45 1 746 Antisense
GAGTGGTAAGAGCCTCTCCATCAAC 689 401 783 Antisense
AGAGCCGGCACAATATCCTGAACTT 691 69 857 Antisense
TCCTGAACTTGGCTGATCTTCTTCT 556 593 872 Antisense
AAGACAAGAGCCTTCTCGTACTCGA 18 135 905 Antisense
GATGTATCCTCTGTCGAACTTCATT 558 409 967 Antisense
AACTTCATTCCCTCGATAAGCTCGA 103 139 983 Antisense
CAGTGATGACTCCAGTGGTTCCGAC 99 209 1038 Antisense
AGATTTCCGACGACGGTGTCTCCAT 74 67 1085 Antisense
ATTGTGGCGACTTGAGCGATCTCTT 666 3 1118 Antisense
Sequence Source Affymetrix Proprietary Database