[Home] | [Total List]

[176319_at]

Description Y41D4B.AA /REP_DB=WormBase Gene ID /WP=CE26087 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 15      4grp_total > 39      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 136.6
(3)
P 		59.3
(-2.6)
A 		54.1
(-3)
A 		59
(-2.6)
A 		83
B 170.2
(3)
P 		63.8
(-2.2)
A 		47.6
(-3)
A 		84.1
(-1.2)
A 		123
C 198
(3)
M 		83.2
(-1.6)
A 		48.7
(-3)
A 		148.1
(1)
A 		149
avr 168.3
(3) 		68.8
(-2.1) 		50.1
(-3) 		97.1
(-0.6) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 126.4
(3)
P 		56.2
(-1.9)
P 		63.2
(-1.5)
A 		41.3
(-3)
A 		79.7
(-0.3)
A 		47.7
(-2.5)
A 		85
B 121.1
(2.7)
P 		125.8
(3)
P 		79.1
(0.1)
A 		58.2
(-1.2)
A 		67.8
(-0.6)
A 		29.6
(-3)
A 		96
C 63.1
(-0.4)
P 		120.7
(3)
P 		73
(0.2)
A 		81.8
(0.7)
A 		33
(-2.1)
A 		18.5
(-3)
A 		102
avr 103.5
(3) 		100.9
(2.8) 		71.8
(0.3) 		60.4
(-0.6) 		60.2
(-0.6) 		31.9
(-3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 49.7
(3)
P 		12.9
(-2.4)
A 		14.1
(-2.2)
A 		8.6
(-3)
A 		41
B 54.3
(3)
P 		15.8
(-2.3)
A 		11
(-3)
A 		17.9
(-2)
A 		43
C 65.5
(3)
M 		23.9
(-2.1)
A 		17
(-3)
A 		25
(-2)
A 		49
avr 56.5
(3) 		17.5
(-2.5) 		14
(-3) 		17.2
(-2.5) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 23.3
(2.7)
P 		20
(1.2)
P 		13.8
(-1.5)
A 		10.5
(-3)
A 		24
(3)
A 		11.6
(-2.5)
A 		14
B 42.1
(3)
P 		41.9
(3)
P 		19.2
(-1.4)
A 		15.4
(-2.2)
A 		27.5
(0.2)
A 		11
(-3)
A 		31
C 23.4
(0.4)
P 		36.8
(3)
P 		18.6
(-0.6)
A 		16.5
(-1)
A 		10.7
(-2.1)
A 		6.2
(-3)
A 		31
avr 29.6
(2.2) 		32.9
(3) 		17.2
(-1) 		14.1
(-1.8) 		20.7
(-0.1) 		9.6
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176319_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19252
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.AA NCBI
Target Description Y41D4B.AA /REP_DB=WormBase Gene ID /WP=CE26087 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067718(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067718 NCBI Caenorhabditis elegans Y41D4B.1 (Y41D4B.1) mRNA, complete cds. 11/11 None
SNAP00000005525 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1672704:1678865:1 10/11 None
Y41D4B.1 ENSEMBL cdna:known chromosome:CEL140:IV:1673850:1675777:1 gene:Y41D4B.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005528 4/11 Cross Hyb Matching Probes None
GENEFINDER00000005531 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1673855-1675783(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41D4B.1
Entrez Gene 189818 Entrez gene
SwissProt Q95Y02 EMBL-EBI
WormBase CE26087 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68459 Hypothetical protein Y41D4B.1 [Caenorhabditis elegans] ref|NP_500119.1| Y41D4B.1 [Caenorhabditis elegans] 1.0E-123
blast CAE67976 Hypothetical protein CBG13582 [Caenorhabditis briggsae] 1.0E-113
blast AAK68459 Hypothetical protein Y41D4B.1 [Caenorhabditis elegans] ref|NP_500119.1| Y41D4B.1 [Caenorhabditis elegans] 2.0E-96
blast CAE67976 Hypothetical protein CBG13582 [Caenorhabditis briggsae] 2.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500119.1 3 109-128,160-178,211-233
Y41D4B.1 3 109-128,160-178,211-233
SNAP00000005525 5 15-37,144-166,186-203,238-256,278-300
Sequence
Target Sequence 
>C. ELEGANS:176319_AT
atgcacaatgtgcattctcttcctcagttccagattccctttgtgtcctttttctatggt
ttccatttttattggcaattgaacgaacctacgcatcgcagaattacgagtcctatgaga
cgaatgaatttccgacgtttgtcgaaatttcgtgtggagttatgtggttcccggcttgcc
aatactcacttctgcagaagactagtatgcaaagaaacacgtggtttgtgataattgcct
cgttttccgtgtgtttctccgttttcttcaagttactggaaatgaaaaacaaggcaatgg
agattcaattgtacaatgattacgtgttcagtgcccgatttcaagttcgtgaaaatatca
agacatgccgatttgcgtgcgggctccttctccttttcttcacatttttcttcattttct
tcattttcgataggaatttggagactagcgatgaatctcgaatggcttctgcggctagaa
gggtagaaaccttttttttaaattgtgctgaaaatgttcgaagagtacttatttttgatc
ttcccaatgtttgcacttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCACAATGTGCATTCTCTTCCTC 580 43 119 Antisense
GTGTCCTTTTTCTATGGTTTCCATT 406 487 161 Antisense
GAACGAACCTACGCATCGCAGAATT 204 347 199 Antisense
GTGTGGAGTTATGTGGTTCCCGGCT 486 485 270 Antisense
CTTGCCAATACTCACTTCTGCAGAA 316 219 293 Antisense
GTTTGTGATAATTGCCTCGTTTTCC 617 451 342 Antisense
TTCTCCGTTTTCTTCAAGTTACTGG 253 687 373 Antisense
GATTACGTGTTCAGTGCCCGATTTC 704 425 436 Antisense
AGACATGCCGATTTGCGTGCGGGCT 696 71 479 Antisense
ATGAATCTCGAATGGCTTCTGCGGC 19 45 569 Antisense
GATCTTCCCAATGTTTGCACTTGTT 610 417 655 Antisense
Sequence Source Affymetrix Proprietary Database