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[176318_s_at] 7TM chemoreceptor, str family /// ---

Description Y19D10A.Q /REP_DB=WormBase Gene ID /WP=CE21453 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 08      4grp_total > 62      6grp_cgc > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 2.9
(1.9)
A 		3.4
(3)
A 		0.7
(-3)
A 		2.3
(0.6)
A 		3
B 27.3
(3)
A 		14.5
(-0.1)
A 		17.4
(0.6)
A 		2.6
(-3)
A 		25
C 1.4
(-3)
A 		3.7
(-0.6)
A 		5.9
(1.7)
A 		7.2
(3)
A 		6
avr 10.5
(3) 		7.2
(-0) 		8
(0.7) 		4
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.3
(-2.1)
A 		2
(-2.3)
A 		11.2
(3)
A 		4.1
(-1.1)
A 		0.8
(-3)
A 		6.2
(0.1)
A 		10
B 1.1
(-0.6)
A 		0.8
(-1.8)
A 		0.5
(-3)
A 		0.9
(-1.4)
A 		1.4
(0.6)
A 		2
(3)
A 		2
C 13.4
(3)
A 		2.4
(-2.2)
A 		1.2
(-2.8)
A 		5
(-1)
A 		0.8
(-3)
A 		1.8
(-2.5)
A 		13
avr 5.6
(3) 		1.7
(-2.1) 		4.3
(1.3) 		3.3
(0) 		1
(-3) 		3.3
(0) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1
(3)
A 		0.7
(0.8)
A 		0.2
(-3)
A 		0.3
(-2.3)
A 		1
B 8.7
(3)
A 		3.6
(-0.8)
A 		4
(-0.5)
A 		0.6
(-3)
A 		8
C 0.5
(-3)
A 		1.1
(-0.8)
A 		2.1
(3)
A 		1.2
(-0.4)
A 		2
avr 3.4
(3) 		1.8
(-0.6) 		2.1
(0.1) 		0.7
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.4
(-2.7)
A 		0.7
(-1.9)
A 		2.4
(3)
A 		1
(-1)
A 		0.3
(-3)
A 		1.5
(0.4)
A 		2
B 0.4
(0)
A 		0.3
(-1)
A 		0.1
(-3)
A 		0.2
(-2)
A 		0.6
(2)
A 		0.7
(3)
A 		1
C 5
(3)
A 		0.7
(-2.5)
A 		0.3
(-3)
A 		1
(-2.1)
A 		0.3
(-3)
A 		0.6
(-2.6)
A 		5
avr 1.9
(3) 		0.6
(-2.2) 		0.9
(-1) 		0.7
(-1.8) 		0.4
(-3) 		0.9
(-1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176318_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19492
Sequence Type Exemplar sequence
Representative Public ID Y19D10A.Q NCBI
Target Description Y19D10A.Q /REP_DB=WormBase Gene ID /WP=CE21453 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071261(11), NM_071288(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071261 NCBI Caenorhabditis elegans Y19D10A.1 (Y19D10A.1) mRNA, complete cds. 11/11 None
NM_071288 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-257) (str-257) mRNA, complete cds. 10/11 A 
GENEFINDER00000008436 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2517358:2520699:1 11/11 None
GENEFINDER00000029975 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2409079:2412420:1 11/11 None
Y19D10A.1 ENSEMBL cdna:known chromosome:CEL140:V:2409079:2410566:1 gene:Y19D10A.1 11/11 None
C01B4.1 ENSEMBL cdna:known chromosome:CEL140:V:2517358:2521599:1 gene:C01B4.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2409078-2410566(+) 100.0 100.0
chrV:2517357-2518845(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family

Gene Symbol str-257
Ensembl Y19D10A.1
C01B4.1
Entrez Gene 182052 Entrez gene
189480 Entrez gene
SwissProt Q9UAU2 EMBL-EBI
Q966D0 EMBL-EBI
WormBase CE38138 Wormbase
CE21453 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14693 Seven tm receptor protein 257 [Caenorhabditis elegans] ref|NP_503689.2| Seven TM Receptor family member (str-257) [Caenorhabditis elegans] 0.0
blast AAD14693 Seven tm receptor protein 257 [Caenorhabditis elegans] ref|NP_503689.2| Seven TM Receptor family member (str-257) [Caenorhabditis elegans] 1.0E-176
blast AAD14695 Seven tm receptor protein 258 [Caenorhabditis elegans] ref|NP_503686.1| Seven TM Receptor family member (str-258) [Caenorhabditis elegans] 1.0E-173
blast AAD14695 Seven tm receptor protein 258 [Caenorhabditis elegans] ref|NP_503686.1| Seven TM Receptor family member (str-258) [Caenorhabditis elegans] 1.0E-167
blast NP_503659 Y19D10A.2 [Caenorhabditis elegans] gb|AAK68415.1| Hypothetical protein Y19D10A.2 [Caenorhabditis elegans] 1.0E-153
blast NP_503659 Y19D10A.2 [Caenorhabditis elegans] gb|AAK68415.1| Hypothetical protein Y19D10A.2 [Caenorhabditis elegans] 1.0E-147
blast AAD14693 Seven tm receptor protein 257 [Caenorhabditis elegans] ref|NP_503689.2| Seven TM Receptor family member (str-257) [Caenorhabditis elegans] 1.0E-136
blast AAD14695 Seven tm receptor protein 258 [Caenorhabditis elegans] ref|NP_503686.1| Seven TM Receptor family member (str-258) [Caenorhabditis elegans] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.5E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503662.1 1 7-29
NP_503689.2 7 6-28,35-57,86-108,129-151,208-230,251-273,286-308
Y19D10A.1 1 7-29
C01B4.1 6 7-29,68-90,111-133,190-212,233-255,268-290
GENEFINDER00000008436 6 7-29,75-97,118-140,197-219,240-262,275-297
GENEFINDER00000029975 6 7-29,75-97,118-140,197-219,240-262,275-297
Sequence
Target Sequence 
>C. ELEGANS:176318_S_AT
gcagctcaacgatgcaatatttttgaacgcttctgtaatttcatctcttggagcctataa
gtacctcatgatgtatatcaacattttcgagctgacctatgcgattttgtattttgcgga
gaaaccgcccgccaattttaactcttacagtgcttttcattggcttcttcggtatgtcag
ttgctattctggcccttcatttcatttatcgatacctcagtatcacaaagagcaatctac
tgaaaacattcgattcgtcgaaaattgtgccgtggtttatgataccattgctgaacggaa
taacgtttatgtgtacagcggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCTCAACGATGCAATATTTTTG 130 313 15 Antisense
GATGCAATATTTTTGAACGCTTCTG 288 413 25 Antisense
TATTTTTGAACGCTTCTGTAATTTC 702 657 32 Antisense
CTTCTGTAATTTCATCTCTTGGAGC 294 219 44 Antisense
TGGAGCCTATAAGTACCTCATGATG 152 549 63 Antisense
GTATATCAACATTTTCGAGCTGACC 501 453 87 Antisense
CAACATTTTCGAGCTGACCTATGCG 60 189 93 Antisense
TTTCGAGCTGACCTATGCGATTTTG 213 669 99 Antisense
GATTCGTCGAAAATTGTGCCGTGGT 660 431 266 Antisense
TCGTCGAAAATTGTGCCGTGGTTTA 267 31 269 Antisense
GAATAACGTTTATGTGTACAGCGGG 140 327 312 Antisense
Sequence Source Affymetrix Proprietary Database