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[176311_at]

Description K08D12.4 /REP_DB=WormBase Gene ID /WP=CE21044 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 50      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 284
1 2 3 4 range
A 9.6
(-3)
A 		251.8
(3)
P 		215.9
(2.1)
P 		41.1
(-2.2)
A 		242
B 33.3
(-2.5)
A 		293.1
(3)
P 		183.4
(0.7)
P 		11.8
(-3)
A 		281
C 20.7
(-3)
A 		227.7
(3)
P 		132.2
(0.2)
P 		60.4
(-1.8)
A 		207
avr 21.2
(-3) 		257.5
(3) 		177.2
(1) 		37.8
(-2.6) 		236

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 164.5
(3)
A 		115.5
(-0.1)
A 		79.5
(-2.3)
A 		78.7
(-2.4)
A 		109.3
(-0.5)
A 		69.1
(-3)
A 		95
B 103.7
(-1.2)
A 		166.5
(3)
P 		75.9
(-3)
A 		83.1
(-2.5)
A 		130.7
(0.6)
P 		112.3
(-0.6)
M 		91
C 138.8
(1.6)
A 		122.6
(0.9)
A 		27.1
(-3)
A 		40.4
(-2.5)
A 		172.4
(3)
A 		94.5
(-0.2)
A 		145
avr 135.7
(2.9) 		134.9
(2.8) 		60.8
(-3) 		67.4
(-2.5) 		137.5
(3) 		92
(-0.6) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 3.5
(-3)
A 		54.7
(2.8)
P 		56.4
(3)
P 		6
(-2.7)
A 		53
B 10.6
(-2.3)
A 		72.4
(3)
P 		42.5
(0.4)
P 		2.5
(-3)
A 		70
C 6.8
(-3)
A 		65.5
(3)
P 		46.1
(1)
P 		10.2
(-2.7)
A 		59
avr 7
(-2.9) 		64.2
(3) 		48.3
(1.4) 		6.2
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 30.3
(0.3)
A 		41.1
(3)
A 		17.3
(-2.9)
A 		20
(-2.2)
A 		33
(1)
A 		16.8
(-3)
A 		24
B 36.1
(-0.1)
A 		55.4
(3)
P 		18.4
(-3)
A 		22
(-2.4)
A 		53.1
(2.6)
P 		41.9
(0.8)
M 		37
C 51.4
(2.5)
A 		37.4
(0.7)
A 		6.9
(-3)
A 		8.1
(-2.9)
A 		55.8
(3)
A 		31.6
(0)
A 		49
avr 39.3
(1.5) 		44.6
(2.5) 		14.2
(-3) 		16.7
(-2.5) 		47.3
(3) 		30.1
(-0.1) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176311_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11097
Sequence Type Exemplar sequence
Representative Public ID K08D12.4 NCBI
Target Description K08D12.4 /REP_DB=WormBase Gene ID /WP=CE21044 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067723(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067723 NCBI Caenorhabditis elegans K08D12.4 (K08D12.4) mRNA, complete cds. 11/11 None
SNAP00000039169 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1705327:1708532:1 10/11 None
GENEFINDER00000039178 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1707295:1708532:1 10/11 None
K08D12.4 ENSEMBL cdna:known chromosome:CEL140:IV:1707295:1707773:1 gene:K08D12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1707300-1707779(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08D12.4
Entrez Gene 187157 Entrez gene
SwissProt Q966I9 EMBL-EBI
WormBase CE21044 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84543 Hypothetical protein K08D12.4 [Caenorhabditis elegans] ref|NP_500124.1| K08D12.4 [Caenorhabditis elegans] 2.0E-52
blast AAK84543 Hypothetical protein K08D12.4 [Caenorhabditis elegans] ref|NP_500124.1| K08D12.4 [Caenorhabditis elegans] 3.0E-46
blast AAK84543 Hypothetical protein K08D12.4 [Caenorhabditis elegans] ref|NP_500124.1| K08D12.4 [Caenorhabditis elegans] 4.0E-46
blast CAE67979 Hypothetical protein CBG13585 [Caenorhabditis briggsae] 6.0E-40
blast CAE67979 Hypothetical protein CBG13585 [Caenorhabditis briggsae] 1.0E-39
blast CAE67979 Hypothetical protein CBG13585 [Caenorhabditis briggsae] 2.0E-39
Sequence
Target Sequence 
>C. ELEGANS:176311_AT
tccgccgggattcgtacagtcgaatgacccgtcgcaagtcggagcccggtgctccgacct
catactctatcccgtttcggccgttgatcaaaccgatcaatacagattcgactatagtga
tgtttcattcggcaacactcatgctcagggagcaactgtggcgataacgtgtacgacggg
cggccaagcggccacagttgaaggatacgaccaggcccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGCCGGGATTCGTACAGTCGAAT 291 597 66 Antisense
TACAGTCGAATGACCCGTCGCAAGT 568 641 80 Antisense
TCGAATGACCCGTCGCAAGTCGGAG 670 599 85 Antisense
AAGTCGGAGCCCGGTGCTCCGACCT 375 157 101 Antisense
CAAACCGATCAATACAGATTCGACT 531 191 154 Antisense
GTGATGTTTCATTCGGCAACACTCA 27 485 182 Antisense
ATTCGGCAACACTCATGCTCAGGGA 194 11 192 Antisense
AGGGAGCAACTGTGGCGATAACGTG 601 57 212 Antisense
GCGATAACGTGTACGACGGGCGGCC 294 249 226 Antisense
GGCCAAGCGGCCACAGTTGAAGGAT 57 543 247 Antisense
AGTTGAAGGATACGACCAGGCCCAA 263 63 261 Antisense
Sequence Source Affymetrix Proprietary Database