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[176310_s_at]

Description C44B7.2B /REP_DB=WormBase Gene ID /WP=CE25812 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 95      4grp_high_8_8 > 02      6grp_total > 75      4grp_total > 13      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 500
1 2 3 4 range
A 530
(-0.5)
P 		427.1
(-1.7)
P 		321.2
(-3)
M 		821.6
(3)
P 		500
B 625.2
(0.5)
P 		454.9
(-2.8)
P 		442.5
(-3)
M 		758.5
(3)
P 		316
C 814.9
(3)
P 		470.3
(-2.5)
P 		435.6
(-3)
P 		793.8
(2.7)
P 		379
avr 656.7
(0.9) 		450.8
(-2.2) 		399.8
(-3) 		791.3
(3) 		392

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 451.6
(-1.8)
P 		470.9
(-1.3)
P 		422.6
(-2.6)
P 		636.4
(3)
P 		407.5
(-3)
P 		521.7
(-0)
P 		229
B 361.6
(-3)
P 		455.4
(0.4)
P 		410.8
(-1.2)
P 		423.1
(-0.8)
P 		529.5
(3)
P 		526.9
(2.9)
P 		168
C 404.4
(-2.2)
P 		480.3
(-0.5)
P 		481.9
(-0.5)
M 		551
(1.1)
P 		369.7
(-3)
P 		638.2
(3)
P 		269
avr 405.9
(-3) 		468.9
(-0.6) 		438.4
(-1.8) 		536.8
(2) 		435.6
(-1.9) 		562.3
(3) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 193
(3)
P 		92.7
(-2.5)
P 		84
(-3)
M 		120.3
(-1)
P 		109
B 199.4
(3)
P 		112.3
(-2.4)
P 		102.5
(-3)
M 		161.6
(0.7)
P 		97
C 269.8
(3)
P 		135.2
(-2.9)
P 		151.8
(-2.2)
P 		133.8
(-3)
P 		136
avr 220.7
(3) 		113.4
(-3) 		112.8
(-3) 		138.6
(-1.6) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 83.3
(-3)
P 		167.5
(3)
P 		92
(-2.4)
P 		161.4
(2.6)
P 		123
(-0.2)
P 		127
(0.1)
P 		84
B 125.8
(-1.6)
P 		151.6
(-0.3)
P 		99.8
(-3)
P 		112.1
(-2.4)
P 		215.1
(3)
P 		196.5
(2)
P 		115
C 149.9
(-0.7)
P 		146.6
(-0.9)
P 		122.7
(-2.3)
M 		110.8
(-3)
P 		119.6
(-2.5)
P 		213.6
(3)
P 		103
avr 119.7
(-1.8) 		155.2
(1.1) 		104.8
(-3) 		128.1
(-1.1) 		152.6
(0.9) 		179
(3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176310_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4993
Sequence Type Exemplar sequence
Representative Public ID C44B7.2B NCBI
Target Description C44B7.2B /REP_DB=WormBase Gene ID /WP=CE25812 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063011(11), NM_063010(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063011 NCBI Caenorhabditis elegans C44B7.2b (C44B7.2) mRNA, complete cds. 11/11 None
NM_063010 NCBI Caenorhabditis elegans C44B7.2a (C44B7.2) mRNA, complete cds. 11/11 A 
SNAP00000013951 ENSEMBL cdna:SNAP chromosome:CEL140:II:6899569:6901523:1 9/11 None
GENEFINDER00000013960 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6899583:6901523:1 9/11 None
C44B7.2b.1 ENSEMBL cdna:known chromosome:CEL140:II:6898658:6900699:1 gene:C44B7.2 11/11 None
C44B7.2b.2 ENSEMBL cdna:known chromosome:CEL140:II:6898665:6900669:1 gene:C44B7.2 11/11 None
C44B7.2a.2 ENSEMBL cdna:known chromosome:CEL140:II:6898680:6901651:1 gene:C44B7.2 11/11 A 
C44B7.2a.1 ENSEMBL cdna:known chromosome:CEL140:II:6898680:6901708:1 gene:C44B7.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6898675-6900665(+) 100.0 100.0
Public Domain and Genome References
Ensembl C44B7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL16320 Hypothetical protein C44B7.2a [Caenorhabditis elegans] ref|NP_495411.2| C44B7.2a [Caenorhabditis elegans] 0.0
blast T15805 hypothetical protein C44B7.2 - Caenorhabditis elegans 0.0
blast CAE65989 Hypothetical protein CBG11180 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 4.4E-9
Sequence
Target Sequence 
>C. ELEGANS:176310_S_AT
catcgatgccgatgtcatctaccagatttctaatgcacaaggaaaggtgcttcgtgttgc
tgtaatgcacaagccaactgtagttcaagccttagttgaatttgaaagcatggaagttgc
gaaagcagcgaaacacgcaatgaatggagctgatatctattctggttgttgtactcttaa
agttgaatttgccaagccggatcgagttcgtgttcaacgtcaggacaaagatcaacgaga
cttcactcttccagataatagacgtccatatgaagacgatcggaatcattacgatcgtca
tgactatcaagctccatcttcatatggatattcttcacgcggaggaggtcattcagacta
ttacggtggtgatcgtggaggaccaccacatccaccaccgtctcgttatcgtgatgacta
tgaagacagaggatatgctcagccggcgggtggaggtccaggatgtgtgatgatgatcta
tggtctcgaacacgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCGATGCCGATGTCATCTACCAG 498 211 411 Antisense
GAAAGGTGCTTCGTGTTGCTGTAAT 410 361 452 Antisense
GGAGCTGATATCTATTCTGGTTGTT 597 521 556 Antisense
ATTTGCCAAGCCGGATCGAGTTCGT 636 3 597 Antisense
TCGAGTTCGTGTTCAACGTCAGGAC 673 601 612 Antisense
ATCAACGAGACTTCACTCTTCCAGA 284 27 641 Antisense
GTCATGACTATCAAGCTCCATCTTC 6 467 707 Antisense
GATATTCTTCACGCGGAGGAGGTCA 38 425 737 Antisense
CACCACCGTCTCGTTATCGTGATGA 497 201 803 Antisense
TATGCTCAGCCGGCGGGTGGAGGTC 256 655 844 Antisense
GATGATCTATGGTCTCGAACACGGA 321 411 882 Antisense
Sequence Source Affymetrix Proprietary Database