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[176309_at]

Description Y105E8B.AA /REP_DB=WormBase Gene ID /WP=CE25704 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_high1_10_10 > 25      6grp_total > 0      4grp_total > 31      6grp_total_sub > Hat      6grp_high1_sub > 01_02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 297
(3)
P 		166.9
(-3)
A 		170.7
(-2.8)
P 		181.6
(-2.3)
P 		130
B 210.7
(3)
P 		110.1
(-1.8)
A 		85.3
(-3)
A 		208.9
(2.9)
P 		125
C 207.1
(3)
P 		171.9
(-2)
M 		196.4
(1.5)
P 		165
(-3)
P 		42
avr 238.3
(3) 		149.6
(-3) 		150.8
(-2.9) 		185.2
(-0.6) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 93.5
(-3)
A 		206.5
(2.5)
P 		117.1
(-1.8)
P 		215.7
(3)
P 		157
(0.1)
P 		207.3
(2.6)
P 		122
B 268.9
(3)
P 		225
(1)
P 		199.7
(-0.2)
M 		166.6
(-1.7)
P 		214
(0.5)
P 		139.6
(-3)
P 		129
C 183.6
(-1.4)
P 		248.8
(3)
P 		239.9
(2.4)
P 		182.1
(-1.5)
P 		159
(-3)
P 		234.8
(2.1)
P 		90
avr 182
(-2.4) 		226.8
(3) 		185.6
(-1.9) 		188.1
(-1.6) 		176.7
(-3) 		193.9
(-0.9) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 108.1
(3)
P 		36.2
(-2.3)
A 		44.6
(-1.7)
P 		26.6
(-3)
P 		82
B 67.2
(3)
P 		27.2
(-2.1)
A 		19.8
(-3)
A 		44.5
(0.1)
P 		47
C 68.6
(3)
P 		49.4
(0.2)
M 		68.4
(3)
P 		27.8
(-3)
P 		41
avr 81.3
(3) 		37.6
(-2.4) 		44.3
(-1.6) 		33
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 17.2
(-3)
A 		73.4
(3)
P 		25.5
(-2.1)
P 		54.7
(1)
P 		47.4
(0.2)
P 		50.5
(0.6)
P 		56
B 93.6
(3)
P 		74.9
(0.7)
P 		48.5
(-2.5)
M 		44.1
(-3)
P 		86.9
(2.2)
P 		52.1
(-2)
P 		50
C 68.1
(1.5)
P 		75.9
(2.6)
P 		61.1
(0.5)
P 		36.6
(-3)
P 		51.4
(-0.9)
P 		78.6
(3)
P 		42
avr 59.6
(-0.1) 		74.7
(3) 		45
(-3) 		45.1
(-3) 		61.9
(0.4) 		60.4
(0.1) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176309_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18816
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.AA NCBI
Target Description Y105E8B.AA /REP_DB=WormBase Gene ID /WP=CE25704 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000013511 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14560361:14573962:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_170955 8/11 Cross Hyb Matching Probes A 
SNAP00000013358 8/11 Cross Hyb Matching Probes None
Y105E8A.23 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14560291-14573893(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD21670 Hypothetical protein Y105E8A.23 [Caenorhabditis elegans] ref|NP_740951.2| Y105E8A.23 [Caenorhabditis elegans] 0.0
blast CAE72599 Hypothetical protein CBG19789 [Caenorhabditis briggsae] 0.0
blast EAL34064 GA18324-PA [Drosophila pseudoobscura] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR002092 EMBL-EBI DNA-directed RNA polymerase, bacteriophage type 6.1E-77
Pfam IPR002092 EMBL-EBI DNA-directed RNA polymerase, bacteriophage type 1.4E-30
Sequence
Target Sequence 
>C. ELEGANS:176309_AT
agatgcggcaatctttgcccgttaccttgcccgaaagacgtttgccagtctaaatgatgc
ggcaatattcgcccgttacctcgcccgaaagacgtttgccagtctaaacgacgcgttcac
aagttcaatggctctaaaagattggttccgactgattgcaaaaggatcaagtgatttaat
gaagacagttgaatggattacaccccttggactaccagttgtacaaccatattgcaaact
tgtcgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGCGGCAATCTTTGCCCGTTAC 265 67 2880 Antisense
TACCTTGCCCGAAAGACGTTTGCCA 682 645 2902 Antisense
TGATGCGGCAATATTCGCCCGTTAC 660 565 2934 Antisense
CTCGCCCGAAAGACGTTTGCCAGTC 557 231 2959 Antisense
TTTGCCAGTCTAAACGACGCGTTCA 144 667 2974 Antisense
GACGCGTTCACAAGTTCAATGGCTC 234 381 2989 Antisense
GGCTCTAAAAGATTGGTTCCGACTG 321 537 3009 Antisense
GATTGGTTCCGACTGATTGCAAAAG 597 435 3019 Antisense
TGAATGGATTACACCCCTTGGACTA 125 565 3069 Antisense
CCTTGGACTACCAGTTGTACAACCA 695 265 3084 Antisense
CAACCATATTGCAAACTTGTCGAAC 224 185 3103 Antisense
Sequence Source Affymetrix Proprietary Database