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[176308_at]

Description Y92H12A.A /REP_DB=WormBase Gene ID /WP=CE26599 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 65      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 42.7
(-3)
A 		66.1
(3)
A 		51.6
(-0.7)
A 		48.9
(-1.4)
A 		23
B 65.2
(3)
A 		52.3
(1.2)
A 		22.8
(-3)
A 		51.1
(1)
A 		42
C 33.1
(-3)
A 		84.5
(2.4)
A 		66
(0.4)
A 		90.5
(3)
A 		57
avr 47
(-2.9) 		67.6
(3) 		46.8
(-3) 		63.5
(1.8) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 66
(0.2)
A 		51.6
(-1.4)
A 		37.3
(-3)
A 		56
(-0.9)
A 		51.8
(-1.4)
A 		90.8
(3)
A 		54
B 23
(-3)
A 		66.3
(3)
A 		43.4
(-0.2)
A 		34.1
(-1.5)
A 		40
(-0.6)
A 		40.3
(-0.6)
A 		43
C 42
(-0.9)
A 		36.4
(-1.6)
A 		73.2
(3)
A 		68.4
(2.4)
A 		37.9
(-1.4)
A 		25.6
(-3)
A 		48
avr 43.7
(-2.7) 		51.4
(2.1) 		51.3
(2.1) 		52.8
(3) 		43.2
(-3) 		52.2
(2.6) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 15.5
(3)
A 		14.4
(2.2)
A 		13.5
(1.6)
A 		7.2
(-3)
A 		8
B 20.8
(3)
A 		12.9
(-0.1)
A 		5.3
(-3)
A 		10.9
(-0.8)
A 		16
C 10.9
(-3)
A 		24.3
(3)
A 		23
(2.4)
A 		15.3
(-1)
A 		13
avr 15.7
(1.5) 		17.2
(3) 		13.9
(-0.2) 		11.1
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 12.2
(-1.2)
A 		18.4
(1.4)
A 		8.1
(-3)
A 		14.2
(-0.4)
A 		15.6
(0.2)
A 		22.1
(3)
A 		14
B 8
(-3)
A 		22.1
(3)
A 		10.5
(-1.9)
A 		9
(-2.6)
A 		16.2
(0.5)
A 		15
(-0)
A 		14
C 15.6
(1.2)
A 		11.1
(-1.5)
A 		18.6
(3)
A 		13.8
(0.1)
A 		12.2
(-0.8)
A 		8.6
(-3)
A 		10
avr 11.9
(-3) 		17.2
(3) 		12.4
(-2.4) 		12.3
(-2.5) 		14.7
(0.2) 		15.2
(0.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176308_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18665
Sequence Type Exemplar sequence
Representative Public ID Y92H12A.A NCBI
Target Description Y92H12A.A /REP_DB=WormBase Gene ID /WP=CE26599 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058461(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058461 NCBI Caenorhabditis elegans Y92H12A.6 (Y92H12A.6) mRNA, complete cds. 11/11 None
SNAP00000039118 ENSEMBL cdna:SNAP chromosome:CEL140:I:1491360:1514410:-1 11/11 None
GENEFINDER00000039129 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1493957:1514410:-1 11/11 None
Y92H12A.6 ENSEMBL cdna:known chromosome:CEL140:I:1511189:1514410:-1 gene:Y92H12A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1511188-1514410(-) 92.25 100.0
Public Domain and Genome References
Gene Title
Ensembl Y92H12A.6
Entrez Gene 190784 Entrez gene
SwissProt Q9BKW7 EMBL-EBI
WormBase CE32282 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29734 Hypothetical protein Y92H12A.6 [Caenorhabditis elegans] ref|NP_490862.2| Y92H12A.6 [Caenorhabditis elegans] 0.0
blast CAE74527 Hypothetical protein CBG22281 [Caenorhabditis briggsae] 0.0
blast AAK29733 Hypothetical protein Y92H12A.5 [Caenorhabditis elegans] ref|NP_490861.2| Y92H12A.5 [Caenorhabditis elegans] 0.0
blast AAK29734 Hypothetical protein Y92H12A.6 [Caenorhabditis elegans] ref|NP_490862.2| Y92H12A.6 [Caenorhabditis elegans] 1.0E-180
blast CAE74527 Hypothetical protein CBG22281 [Caenorhabditis briggsae] 1.0E-125
Sequence
Target Sequence 
>C. ELEGANS:176308_AT
caatggcttctagaacctacgtcgtcatgcaaagcccgcttcaaatgcatctaccacctg
gtttcccagtgcccgacacttcggcttaacctcggcgaagacttcttccgtagaacctac
ccgcttctctcgaatccttcattctccagtgtcatctgtcagcttatagtagataatatc
tttgatcgagatgagctttgggatcttcattgtgagcttctcctgacctctactgacgcg
aaactcatcaaaagtcgacttgttccgatgcttcagaagtatcatctgccggggagtaat
aaggaaaagcagcagcagcagcagaagcagcaaaagccccaagaatcggatacagctgtg
aagtttctgaatcagttgctgattcagttgaactctcaggatccgccaagtgatctacag
tca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATGGCTTCTAGAACCTACGTCGT 143 179 559 Antisense
GAACCTACGTCGTCATGCAAAGCCC 121 347 571 Antisense
CAAAGCCCGCTTCAAATGCATCTAC 168 193 588 Antisense
GGCTTAACCTCGGCGAAGACTTCTT 426 521 641 Antisense
ATTCTCCAGTGTCATCTGTCAGCTT 253 11 699 Antisense
TCTTCATTGTGAGCTTCTCCTGACC 70 617 762 Antisense
TGACCTCTACTGACGCGAAACTCAT 571 569 782 Antisense
AAAGTCGACTTGTTCCGATGCTTCA 672 121 809 Antisense
GAAGTATCATCTGCCGGGGAGTAAT 495 335 834 Antisense
TTCAGTTGAACTCTCAGGATCCGCC 156 687 941 Antisense
GGATCCGCCAAGTGATCTACAGTCA 166 513 957 Antisense
Sequence Source Affymetrix Proprietary Database