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[176303_s_at]

Description Y22D7AR.H /REP_DB=WormBase Gene ID /WP=CE23429 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 57      4grp_total > 05      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 225.3
(0.1)
A 		193.3
(-1.7)
M 		168.2
(-3)
A 		280
(3)
P 		112
B 196
(-2.2)
A 		173.6
(-3)
A 		176.8
(-2.9)
A 		342.2
(3)
P 		169
C 217.2
(1.9)
A 		150.7
(-3)
A 		160.9
(-2.3)
M 		232.4
(3)
P 		82
avr 212.8
(-0.7) 		172.5
(-2.8) 		168.6
(-3) 		284.9
(3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 150.8
(3)
A 		64.5
(-3)
A 		106.8
(-0.1)
A 		87.4
(-1.4)
A 		105.8
(-0.1)
A 		115.3
(0.5)
A 		86
B 103.8
(-1.6)
A 		99.9
(-1.7)
A 		108.5
(-1.4)
A 		124.9
(-0.8)
A 		66.1
(-3)
A 		224.5
(3)
P 		158
C 66.2
(-2.6)
A 		86.4
(-1.8)
A 		54.2
(-3)
A 		121.9
(-0.5)
A 		76
(-2.2)
A 		218.8
(3)
P 		165
avr 106.9
(-1.6) 		83.6
(-2.9) 		89.8
(-2.6) 		111.4
(-1.3) 		82.6
(-3) 		186.2
(3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 82
(3)
A 		42
(-2.9)
M 		44
(-2.6)
A 		41
(-3)
P 		41
B 62.5
(1)
A 		42.9
(-2.6)
A 		41
(-3)
A 		72.9
(3)
P 		32
C 71.9
(3)
A 		43.3
(-2.2)
A 		56.1
(0.1)
M 		39.2
(-3)
P 		33
avr 72.1
(3) 		42.7
(-3) 		47
(-2.1) 		51
(-1.3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 27.8
(0.5)
A 		22.9
(-2.6)
A 		23.3
(-2.3)
A 		22.2
(-3)
A 		31.9
(3)
A 		28.1
(0.6)
A 		10
B 36.1
(-2)
A 		33.2
(-2.3)
A 		26.4
(-3)
A 		33.1
(-2.3)
A 		26.8
(-3)
A 		83.7
(3)
P 		57
C 24.5
(-1.9)
A 		26.4
(-1.7)
A 		13.8
(-3)
A 		24.5
(-1.9)
A 		24.6
(-1.9)
A 		73.2
(3)
P 		59
avr 29.5
(-1.8) 		27.5
(-2.1) 		21.2
(-3) 		26.6
(-2.2) 		27.8
(-2) 		61.7
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176303_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19060
Sequence Type Exemplar sequence
Representative Public ID Y22D7AR.H NCBI
Target Description Y22D7AR.H /REP_DB=WormBase Gene ID /WP=CE23429 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065042(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065042 NCBI Caenorhabditis elegans Y22D7AR.6 (Y22D7AR.6) mRNA, complete cds. 11/11 None
GENEFINDER00000025847 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1672781:1676469:-1 11/11 None
SNAP00000025831 ENSEMBL cdna:SNAP chromosome:CEL140:III:1672799:1677630:-1 11/11 None
Y22D7AR.6 ENSEMBL cdna:known chromosome:CEL140:III:1672506:1676710:-1 gene:Y22D7AR.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1672780-1676469(-) 94.55 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AR.6
Entrez Gene 175320 Entrez gene
SwissProt Q9BKX8 EMBL-EBI
WormBase CE23429 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8440 inositol trisphosphate 3-kinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29869 Hypothetical protein Y22D7AR.6 [Caenorhabditis elegans] ref|NP_497443.1| Y22D7AR.6 [Caenorhabditis elegans] 1.0E-164
blast AAK29869 Hypothetical protein Y22D7AR.6 [Caenorhabditis elegans] ref|NP_497443.1| Y22D7AR.6 [Caenorhabditis elegans] 1.0E-145
blast CAE66458 Hypothetical protein CBG11735 [Caenorhabditis briggsae] 1.0E-126
blast CAE66458 Hypothetical protein CBG11735 [Caenorhabditis briggsae] 1.0E-109
blast CAB03023 Hypothetical protein F30A10.3 [Caenorhabditis elegans] ref|NP_492519.2| F30A10.3 [Caenorhabditis elegans] 2.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR005522 EMBL-EBI Inositol polyphosphate kinase 1.2E-108
Pfam IPR005522 EMBL-EBI Inositol polyphosphate kinase 2.9E-105
Sequence
Target Sequence 
>C. ELEGANS:176303_S_AT
aaatttcatagtcctctcggacctcacctaccgtatgaaatcccctcgaatccttgacct
gaagctcggcacacgacaacacggcgatcaggctaccgtatccaaaattgcgtgtatgac
cgcaaaatgtcaagctaccacgtcagcgacgctaggaatccggctctgcggcatgaaaat
tccatttttggagcaaaattcccagaattttgctccaaattttgctccgaattcggcagc
tccaaattttgctccaaaatccgaaatttcaattaacaaatatatgggacgatctatgga
caaaactgatctatttctggcggtcaaacaatttttcgacgtgcctgaagcagttctgga
ggaagttgagcgaaggttgctcggaattcgagatgtgctctgtggagccgatggggtgcg
gctcttcggagcatctttgctcattgtcattgaatctaattttagtgactcacaactccc
aatcgataatctggtacgcatcaaagtggtggatttcgcgaacgccacattcgggggtct
tcaaggcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTTCATAGTCCTCTCGGACCTC 345 115 357 Antisense
GGACCTCACCTACCGTATGAAATCC 429 523 375 Antisense
TCGAATCCTTGACCTGAAGCTCGGC 396 599 402 Antisense
GCACACGACAACACGGCGATCAGGC 486 317 425 Antisense
AATGTCAAGCTACCACGTCAGCGAC 338 163 482 Antisense
GAATCCGGCTCTGCGGCATGAAAAT 572 329 512 Antisense
TTTGCTCCGAATTCGGCAGCTCCAA 351 669 577 Antisense
TCGACGTGCCTGAAGCAGTTCTGGA 642 601 692 Antisense
GACTCACAACTCCCAATCGATAATC 24 375 823 Antisense
GGTGGATTTCGCGAACGCCACATTC 159 499 864 Antisense
GCCACATTCGGGGGTCTTCAAGGCG 525 279 880 Antisense
Sequence Source Affymetrix Proprietary Database