[Home] | [Total List]

[176301_at]

Description Y71G12B.C /REP_DB=WormBase Gene ID /WP=CE22902 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 35      4grp_high_8_8 > 45      6grp_highest_nonorm > 90      6grp_total > 25      4grp_total > 50      6grp_highest_sub > 01_02      6grp_high1_sub > 02      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 209.5
(-1.1)
P 		361.7
(3)
P 		268.9
(0.5)
P 		141.3
(-3)
P 		220
B 194.8
(-0.8)
P 		352.6
(3)
P 		315
(2.1)
P 		104.6
(-3)
P 		248
C 159.4
(-2.9)
P 		378.5
(3)
P 		303.3
(1)
P 		157.4
(-3)
M 		221
avr 187.9
(-1.6) 		364.3
(3) 		295.7
(1.2) 		134.4
(-3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 187.3
(3)
P 		178.9
(2.3)
P 		144.4
(-0.5)
P 		114.7
(-3)
P 		133.7
(-1.4)
P 		116.9
(-2.8)
P 		73
B 155.5
(0.6)
P 		198.2
(3)
P 		141.7
(-0.1)
P 		137.9
(-0.4)
P 		90.2
(-3)
P 		143.9
(-0)
P 		108
C 193.4
(3)
P 		163.3
(0.9)
P 		131.9
(-1.3)
P 		125
(-1.8)
P 		108.5
(-3)
P 		139.3
(-0.8)
P 		85
avr 178.7
(2.9) 		180.1
(3) 		139.3
(-0.5) 		125.9
(-1.7) 		110.8
(-3) 		133.4
(-1) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 76.3
(2.8)
P 		78.5
(3)
P 		70.3
(2.1)
P 		20.7
(-3)
P 		58
B 62.1
(0.7)
P 		87.1
(3)
P 		73
(1.7)
P 		22.3
(-3)
P 		65
C 52.8
(-1.1)
P 		108.8
(3)
P 		105.7
(2.8)
P 		26.5
(-3)
M 		82
avr 63.7
(0.6) 		91.5
(3) 		83
(2.3) 		23.2
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 34.5
(-2)
P 		63.6
(3)
P 		31.5
(-2.5)
P 		29.1
(-2.9)
P 		40.3
(-1)
P 		28.5
(-3)
P 		35
B 54.1
(0.7)
P 		66
(3)
P 		34.4
(-3)
P 		36.5
(-2.6)
P 		36.7
(-2.6)
P 		53.7
(0.7)
P 		32
C 71.7
(3)
P 		49.8
(0.2)
P 		33.6
(-1.9)
P 		25.1
(-3)
P 		35.1
(-1.7)
P 		46.6
(-0.2)
P 		47
avr 53.4
(1.7) 		59.8
(3) 		33.2
(-2.4) 		30.2
(-3) 		37.4
(-1.5) 		42.9
(-0.4) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176301_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18646
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.C NCBI
Target Description Y71G12B.C /REP_DB=WormBase Gene ID /WP=CE22902 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058492(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058492 NCBI Caenorhabditis elegans Y71G12B.26 (Y71G12B.26) mRNA, complete cds. 11/11 None
SNAP00000001792 ENSEMBL cdna:SNAP chromosome:CEL140:I:1779840:1797414:-1 11/11 None
GENEFINDER00000001824 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1779840:1782562:-1 11/11 None
Y71G12B.26 ENSEMBL cdna:known chromosome:CEL140:I:1779840:1782014:-1 gene:Y71G12B.26 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1779839-1782014(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71G12B.26
Entrez Gene 171742 Entrez gene
SwissProt Q95XM7 EMBL-EBI
WormBase CE38652 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73927 Hypothetical protein Y71G12B.26 [Caenorhabditis elegans] ref|NP_490893.2| Y71G12B.26 [Caenorhabditis elegans] 0.0
blast CAE74434 Hypothetical protein CBG22167 [Caenorhabditis briggsae] 0.0
blast AAK73927 Hypothetical protein Y71G12B.26 [Caenorhabditis elegans] ref|NP_490893.2| Y71G12B.26 [Caenorhabditis elegans] 1.0E-173
blast CAE74434 Hypothetical protein CBG22167 [Caenorhabditis briggsae] 1.0E-155
blast CAE74435 Hypothetical protein CBG22168 [Caenorhabditis briggsae] 2.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490893.2 10 47-69,82-104,141-163,168-190,218-237,252-271,283-302,307-329,342-364,368-387
Y71G12B.26 9 161-183,220-242,247-269,297-316,331-350,362-381,386-408,421-443,447-466
SNAP00000001792 10 166-188,201-223,260-282,287-309,337-356,371-390,402-421,426-448,461-483,487-506
GENEFINDER00000001824 10 47-69,82-104,141-163,168-190,218-237,252-271,283-302,307-329,342-364,368-387
Sequence
Target Sequence 
>C. ELEGANS:176301_AT
ttcttatgatggtcaccggtccctacaccgcctacgactctcttctcagaaactcgatgg
catcaagcgcaatccgtgatcccaacaacatgcacaatctattcctcacgctgggtctca
caacgctcttcgtcaatctgatacttcttccgaaacttcaaacgatgatctccacacagg
cgctgctctccggctcattttccgtgttggccggaagttatttgtatttagccgtatttc
acgacctgatacatttgttcattggaatgcctgttcaggttgccgcagcgacaatctgca
tcggcgaactctcctcccaactgatgggtgccatcggcaaacggaaggctggaacagcgg
cgtcggtgctccgaatgagccagctcgccgcgattctgctcgtcccgtttgtgcacggaa
tgattgttccacaccacgacgtcgtttcgctttgcgtgatgagtgctgcgatttctggcg
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTATGATGGTCACCGGTCCCTA 599 689 914 Antisense
CTCGATGGCATCAAGCGCAATCCGT 366 229 966 Antisense
GCAATCCGTGATCCCAACAACATGC 161 323 982 Antisense
ACAACATGCACAATCTATTCCTCAC 567 111 998 Antisense
TCACAACGCTCTTCGTCAATCTGAT 155 627 1031 Antisense
GTCAATCTGATACTTCTTCCGAAAC 500 463 1045 Antisense
GGAATGCCTGTTCAGGTTGCCGCAG 226 531 1177 Antisense
AGCGACAATCTGCATCGGCGAACTC 44 81 1200 Antisense
TCTCCTCCCAACTGATGGGTGCCAT 160 609 1223 Antisense
ACGTCGTTTCGCTTTGCGTGATGAG 235 95 1352 Antisense
TGATGAGTGCTGCGATTTCTGGCGG 588 565 1370 Antisense
Sequence Source Affymetrix Proprietary Database