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[176300_at]

Description Y22D7AR.N /REP_DB=WormBase Gene ID /WP=CE26515 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 51      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 11.1
(-3)
A 		14.8
(-2.5)
A 		26.3
(-0.9)
A 		55.1
(3)
A 		44
B 29.4
(0.7)
A 		46.2
(3)
P 		11.7
(-1.7)
A 		1.7
(-3)
A 		45
C 22.2
(-1.9)
A 		62.2
(1.2)
A 		8.8
(-3)
A 		84.2
(3)
A 		75
avr 20.9
(-2) 		41.1
(1.9) 		15.6
(-3) 		47
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 6.8
(-2.8)
A 		30.3
(-0)
A 		41
(1.2)
A 		56.1
(3)
A 		17.9
(-1.5)
A 		5.1
(-3)
A 		51
B 20.1
(-1.3)
A 		4.6
(-2.7)
A 		67.7
(3)
A 		25.2
(-0.9)
A 		1.5
(-3)
A 		26.8
(-0.7)
A 		66
C 21.9
(0.1)
A 		36.4
(2.6)
A 		33.3
(2.1)
A 		38.6
(3)
A 		4.3
(-3)
A 		15.8
(-1)
A 		34
avr 16.3
(-1.7) 		23.8
(-0.6) 		47.3
(3) 		40
(1.9) 		7.9
(-3) 		15.9
(-1.8) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 4.1
(-1.9)
A 		3.2
(-3)
A 		6.9
(1.5)
A 		8.1
(3)
A 		5
B 9.4
(1.9)
A 		11.4
(3)
P 		2.7
(-1.7)
A 		0.4
(-3)
A 		11
C 7.4
(-1.3)
A 		17.9
(3)
A 		3.1
(-3)
A 		14.2
(1.5)
A 		15
avr 7
(-0.5) 		10.8
(3) 		4.2
(-3) 		7.6
(0.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.3
(-3)
A 		10.8
(1.4)
A 		8.9
(0.6)
A 		14.2
(3)
A 		5.4
(-1.1)
A 		1.2
(-3)
A 		13
B 7
(-0.6)
A 		1.5
(-2.7)
A 		16.4
(3)
A 		6.7
(-0.7)
A 		0.6
(-3)
A 		10
(0.6)
A 		16
C 8.1
(1.1)
A 		11.1
(3)
A 		8.5
(1.4)
A 		7.8
(1)
A 		1.4
(-3)
A 		5.3
(-0.6)
A 		10
avr 5.5
(-1) 		7.8
(0.6) 		11.3
(3) 		9.6
(1.8) 		2.5
(-3) 		5.5
(-1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176300_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19052
Sequence Type Exemplar sequence
Representative Public ID Y22D7AR.N NCBI
Target Description Y22D7AR.N /REP_DB=WormBase Gene ID /WP=CE26515 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000025842 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1705977:1715165:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065050 9/11 Negative Strand Matching Probes A 
SNAP00000025838 9/11 Negative Strand Matching Probes None
GENEFINDER00000025846 9/11 Negative Strand Matching Probes None
Y22D7AR.12 9/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1714925-1716875(+) 98.3 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29873 Hypothetical protein Y22D7AR.2 [Caenorhabditis elegans] ref|NP_497449.1| Y22D7AR.2 [Caenorhabditis elegans] 0.0
blast AAK21449 Hypothetical protein R06B10.2 [Caenorhabditis elegans] ref|NP_497309.1| R06B10.2 [Caenorhabditis elegans] 0.0
blast AAB54272 Hypothetical protein R155.2 [Caenorhabditis elegans] ref|NP_497484.1| R155.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 5.7E-29
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.7E-19
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.7E-10
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 9.6E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000025842 2 1056-1078,1123-1145
Sequence
Target Sequence 
>C. ELEGANS:176300_AT
aagtgtgaccaaaaccgtgccaattgccgtacagaaaagcgctacgaatccagatttgat
ggaaagtgaaaagctgattactgctgaagaaaagaccttggaccagactcagatcttgga
ccacatcggattcggagttggcttttttggcttttttcttggcattccgttcttttcgag
ctttggctgcggcaattgcaagcattgtggctttttgttgggcttgaattttctcacgcg
ctgctttcagtttgatgtcaccttttgccttttcctcaagggatgtctttcttgcattga
acagagtttgataccactcgttgtaccattgctgatactcttcgaattcgttgcggcacg
ttgctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGTGACCAAAACCGTGCCAATT 155 157 126 Antisense
GGACCAGACTCAGATCTTGGACCAC 663 521 225 Antisense
GATTCGGAGTTGGCTTTTTTGGCTT 464 431 254 Antisense
TTTTGGCTTTTTTCTTGGCATTCCG 474 677 270 Antisense
TTCTTTTCGAGCTTTGGCTGCGGCA 124 689 295 Antisense
GCATTGTGGCTTTTTGTTGGGCTTG 631 307 327 Antisense
CTCACGCGCTGCTTTCAGTTTGATG 357 229 358 Antisense
TCAGTTTGATGTCACCTTTTGCCTT 584 621 372 Antisense
TGATACCACTCGTTGTACCATTGCT 78 565 434 Antisense
GTACCATTGCTGATACTCTTCGAAT 64 459 448 Antisense
TCGAATTCGTTGCGGCACGTTGCTT 268 601 467 Antisense
Sequence Source Affymetrix Proprietary Database