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[176299_at]

Description Y71G12B.K /REP_DB=WormBase Gene ID /WP=CE22905 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 90      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 7.4
(2.9)
A 		7.5
(3)
A 		2.4
(-3)
A 		4.9
(-0.1)
A 		5
B 21.9
(1.1)
A 		16.4
(-0.2)
A 		29.6
(3)
A 		4.7
(-3)
A 		25
C 2.7
(-3)
A 		10.9
(-1.7)
A 		14
(-1.3)
A 		42
(3)
A 		39
avr 10.7
(-3) 		11.6
(-2.2) 		15.3
(1.2) 		17.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 20.5
(3)
A 		3.5
(-2.7)
A 		4.4
(-2.4)
A 		2.7
(-3)
A 		4
(-2.6)
A 		4.9
(-2.3)
A 		18
B 2.9
(-3)
A 		16.3
(0.2)
A 		3
(-3)
A 		28.1
(3)
A 		13
(-0.6)
A 		13.5
(-0.5)
A 		25
C 3.8
(-2.5)
A 		5.1
(-1.8)
A 		3.2
(-2.8)
A 		2.9
(-3)
A 		10.4
(1.2)
A 		13.5
(3)
A 		11
avr 9.1
(1.4) 		8.3
(0.7) 		3.5
(-3) 		11.2
(3) 		9.1
(1.4) 		10.6
(2.5) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.7
(3)
A 		1.6
(-0.1)
A 		0.6
(-3)
A 		0.7
(-2.7)
A 		2
B 7
(3)
A 		4.1
(0.1)
A 		6.9
(2.9)
A 		1
(-3)
A 		6
C 0.9
(-3)
A 		3.1
(-0.9)
A 		4.9
(0.9)
A 		7.1
(3)
A 		6
avr 3.5
(0) 		2.9
(-3) 		4.1
(3) 		2.9
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 3.8
(3)
A 		1.3
(-1.8)
A 		1
(-2.4)
A 		0.7
(-3)
A 		1.2
(-2)
A 		1.2
(-2)
A 		3
B 1
(-2.7)
A 		5.4
(1.2)
A 		0.7
(-3)
A 		7.4
(3)
A 		5.3
(1.1)
A 		5.1
(0.9)
A 		7
C 1.4
(-1.8)
A 		1.6
(-1.5)
A 		0.8
(-2.7)
A 		0.6
(-3)
A 		3.4
(1.3)
A 		4.5
(3)
A 		4
avr 2.1
(-0.2) 		2.8
(1.3) 		0.8
(-3) 		2.9
(1.5) 		3.3
(2.4) 		3.6
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176299_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18649
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.K NCBI
Target Description Y71G12B.K /REP_DB=WormBase Gene ID /WP=CE22905 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026653(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026653 NCBI Caenorhabditis elegans Y71G12B.31 (Y71G12B.31) mRNA, complete cds. 10/11 None
SNAP00000001782 ENSEMBL cdna:SNAP chromosome:CEL140:I:1686217:1697961:-1 10/11 None
GENEFINDER00000001819 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1686217:1688058:-1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1687716-1688058(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Entrez Gene 3565511 Entrez gene
SwissProt Q4W5R1 EMBL-EBI
WormBase CE38654 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY43987 Hypothetical protein Y71G12B.31 [Caenorhabditis elegans] ref|NP_001021824.1| Y71G12B.31 [Caenorhabditis elegans] 1.0E-157
blast AAY43987 Hypothetical protein Y71G12B.31 [Caenorhabditis elegans] ref|NP_001021824.1| Y71G12B.31 [Caenorhabditis elegans] 1.0E-135
blast CAE74416 Hypothetical protein CBG22148 [Caenorhabditis briggsae] 1.0E-130
blast CAE74416 Hypothetical protein CBG22148 [Caenorhabditis briggsae] 1.0E-108
blast AAY43987 Hypothetical protein Y71G12B.31 [Caenorhabditis elegans] ref|NP_001021824.1| Y71G12B.31 [Caenorhabditis elegans] 3.0E-78
blast CAE74416 Hypothetical protein CBG22148 [Caenorhabditis briggsae] 8.0E-63
blast BAA95171.1 amPTPR4c [Branchiostoma belcheri] 5.0E-35
blast BAA95170.1 amPTPR4b [Branchiostoma belcheri] 6.0E-22
blast XP_796517 PREDICTED: similar to protein tyrosine phosphatase, receptor type, T [Strongylocentrotus purpuratus] 2.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.3E-78
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.6E-53
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 8.7E-34
Sequence
Target Sequence 
>C. ELEGANS:176299_AT
ggagaagtcgatgtgaagctcgtgtgcgaactcgaggaaaaaacctgggtgcaccgtgag
ttcgacgtctcgccgacaagctcctacagctcgagcactaaaagcagccgaaaaagccga
gccagcagacaacagagtcacatgaaagtgtcacaatggcaatacaaagagtggaaggac
actggcggtgcgccgcgaattgccaactttctcgagttcttgctgcaggttagaggacga
caatacacgtcaccgattgttgtgcactgcaggtgggtgcgttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAAGTCGATGTGAAGCTCGTGT 75 521 34 Antisense
GAAGCTCGTGTGCGAACTCGAGGAA 172 343 48 Antisense
AAAACCTGGGTGCACCGTGAGTTCG 704 129 73 Antisense
AAGCTCCTACAGCTCGAGCACTAAA 618 147 111 Antisense
AGCCGAGCCAGCAGACAACAGAGTC 457 83 148 Antisense
GAGTGGAAGGACACTGGCGGTGCGC 144 401 202 Antisense
CGCGAATTGCCAACTTTCTCGAGTT 313 253 227 Antisense
TTTCTCGAGTTCTTGCTGCAGGTTA 362 669 241 Antisense
GAGGACGACAATACACGTCACCGAT 177 405 266 Antisense
ACGTCACCGATTGTTGTGCACTGCA 509 91 280 Antisense
GTGCACTGCAGGTGGGTGCGTTCAA 417 481 295 Antisense
Sequence Source Affymetrix Proprietary Database