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[176298_at]

Description Y22D7AR.A /REP_DB=WormBase Gene ID /WP=CE23409 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 19      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 12.2
(-3)
A 		61.6
(3)
A 		56.3
(2.4)
A 		45
(1)
A 		49
B 19.6
(2.1)
A 		19.6
(2.1)
A 		21.5
(3)
A 		8.3
(-3)
A 		13
C 50.9
(2.5)
A 		53.2
(3)
A 		42.9
(0.7)
A 		26.3
(-3)
A 		27
avr 27.6
(-2.6) 		44.8
(3) 		40.2
(1.5) 		26.5
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 77.1
(3)
A 		27.8
(-1.4)
A 		10.3
(-2.9)
A 		30.2
(-1.1)
A 		31.9
(-1)
A 		9.1
(-3)
A 		68
B 27.8
(0.4)
A 		10.8
(-3)
A 		32.2
(1.3)
A 		19.3
(-1.3)
A 		40.6
(3)
A 		24.7
(-0.2)
A 		30
C 39.7
(3)
A 		16.4
(-1.2)
A 		30
(1.3)
A 		6.3
(-3)
A 		25.8
(0.5)
A 		33.3
(1.9)
A 		33
avr 48.2
(3) 		18.3
(-3) 		24.2
(-1.8) 		18.6
(-2.9) 		32.8
(-0.1) 		22.4
(-2.2) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.4
(-3)
A 		13.4
(2.2)
A 		14.7
(3)
A 		6.6
(-1.7)
A 		10
B 6.3
(3)
A 		4.8
(1)
A 		5
(1.3)
A 		1.8
(-3)
A 		5
C 16.9
(3)
A 		15.3
(2.2)
A 		14.9
(2)
A 		4.4
(-3)
A 		13
avr 9.2
(1.1) 		11.2
(2.8) 		11.5
(3) 		4.3
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 14.2
(3)
A 		9.9
(0.9)
A 		2.2
(-3)
A 		7.6
(-0.3)
A 		9.6
(0.7)
A 		2.2
(-3)
A 		12
B 9.7
(-0.2)
A 		3.6
(-3)
A 		7.8
(-1)
A 		5.1
(-2.3)
A 		16.5
(3)
A 		9.2
(-0.4)
A 		13
C 14.7
(3)
A 		5
(-1.3)
A 		7.6
(-0.2)
A 		1.3
(-3)
A 		8.3
(0.1)
A 		11.2
(1.4)
A 		13
avr 12.9
(3) 		6.2
(-1.9) 		5.9
(-2.1) 		4.7
(-3) 		11.5
(2) 		7.5
(-1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176298_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19007
Sequence Type Exemplar sequence
Representative Public ID Y22D7AR.A NCBI
Target Description Y22D7AR.A /REP_DB=WormBase Gene ID /WP=CE23409 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065051
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000025838 ENSEMBL cdna:SNAP chromosome:CEL140:III:1716518:1721893:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065050 7/11 Cross Hyb Matching Probes A 
GENEFINDER00000043119 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025846 4/11 Cross Hyb Matching Probes None
Y22D7AR.12 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1719591-1725817(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29876 Hypothetical protein Y22D7AR.12 [Caenorhabditis elegans] ref|NP_497451.1| Y22D7AR.12 [Caenorhabditis elegans] 0.0
blast AAK21448 Hypothetical protein R06B10.1 [Caenorhabditis elegans] ref|NP_497308.1| R06B10.1 [Caenorhabditis elegans] 1.0E-153
blast AAB54270 Hypothetical protein R155.4 [Caenorhabditis elegans] ref|NP_497486.2| R155.4 [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.6E-21
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 7.4E-44
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000025838 1 716-738
Sequence
Target Sequence 
>C. ELEGANS:176298_AT
gatgcttcaagtcaattctcagttcttggatcagcaacacgtggaatatccagcatggac
gcagcgttgaacatgaaaattgatttgactaagctgaaattattgtgtgcaactgttcag
aaagagatgtcgaaggtaacattggatgcaaaggatcagaagaaccttcagagactggcc
actttgggagctgatttggacagaatgaaagctagtttgaaccagtctgtgagcaatgtg
aagccgtcgaattctccaaagttagctgatcatgcagaagtgtttgaagcagcatcgaaa
gttcagggtgtcaaaggagacttcattgctatcaaggaatcagtgattaccttcattgag
ttgaccaagtcaaacaagttgacagatcttccaccaatcctcgaaactcttgatcggatc
ggattagactttgcaagccattccaaggactatgctgactcaaagcaggctcttcaagtt
ttggatacgtcttttgcaaatctcaacaagaaactgacgcctccagctccaccacaaccc
atcagctcaaaccagcaacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCTTCAAGTCAATTCTCAGTTC 291 413 2395 Antisense
TATCCAGCATGGACGCAGCGTTGAA 219 657 2441 Antisense
AGAACCTTCAGAGACTGGCCACTTT 672 73 2555 Antisense
GAAGCCGTCGAATTCTCCAAAGTTA 286 345 2634 Antisense
CAAGTTGACAGATCTTCCACCAATC 360 183 2769 Antisense
TCCACCAATCCTCGAAACTCTTGAT 535 589 2784 Antisense
GACTTTGCAAGCCATTCCAAGGACT 149 373 2821 Antisense
GCAGGCTCTTCAAGTTTTGGATACG 328 297 2859 Antisense
GGATACGTCTTTTGCAAATCTCAAC 242 511 2877 Antisense
CAACAAGAAACTGACGCCTCCAGCT 687 189 2898 Antisense
ACCCATCAGCTCAAACCAGCAACAT 339 91 2931 Antisense
Sequence Source Affymetrix Proprietary Database