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[176297_s_at]

Description Y71G12B.O /REP_DB=WormBase Gene ID /WP=CE22926 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 08      4grp_total > 46      6grp_cgc > 0      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 187.2
(3)
P 		78.3
(-3)
A 		93.8
(-2.1)
A 		108.7
(-1.3)
A 		109
B 151.6
(3)
P 		143.8
(2.3)
A 		118.1
(0.1)
A 		82
(-3)
P 		70
C 187.1
(3)
P 		138.7
(-0)
A 		110.2
(-1.8)
P 		90.9
(-3)
A 		96
avr 175.3
(3) 		120.3
(-1.1) 		107.4
(-2) 		93.9
(-3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 136.8
(3)
A 		116.8
(1.7)
P 		86.2
(-0.4)
P 		102.1
(0.7)
A 		46.6
(-3)
A 		66.9
(-1.6)
A 		90
B 141.5
(3)
P 		90.1
(-0.7)
A 		114
(1)
A 		107.7
(0.5)
A 		59.1
(-3)
A 		72.4
(-2)
P 		82
C 120.5
(3)
P 		33.1
(-3)
A 		45.1
(-2.2)
A 		101.8
(1.7)
M 		92.8
(1.1)
A 		81.7
(0.3)
P 		87
avr 132.9
(3) 		80
(-1.8) 		81.8
(-1.6) 		103.9
(0.4) 		66.2
(-3) 		73.7
(-2.3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 68.2
(3)
P 		17
(-2.9)
A 		24.5
(-2)
A 		15.9
(-3)
A 		52
B 48.4
(3)
P 		35.5
(0.5)
A 		27.4
(-1.1)
A 		17.5
(-3)
P 		31
C 61.9
(3)
P 		39.9
(0.2)
A 		38.4
(-0)
P 		15.3
(-3)
A 		47
avr 59.5
(3) 		30.8
(-1) 		30.1
(-1.1) 		16.2
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 25.2
(-0.6)
A 		41.5
(3)
P 		18.8
(-2)
P 		25.9
(-0.4)
A 		14.1
(-3)
A 		16.3
(-2.5)
A 		27
B 49.2
(3)
P 		30
(-1.6)
A 		27.7
(-2.1)
A 		28.5
(-1.9)
A 		24
(-3)
A 		27
(-2.3)
P 		25
C 44.7
(3)
P 		10.1
(-3)
A 		11.5
(-2.8)
A 		20.5
(-1.2)
M 		30
(0.5)
A 		27.3
(-0)
P 		35
avr 39.7
(3) 		27.2
(-0.7) 		19.3
(-3) 		25
(-1.3) 		22.7
(-2) 		23.5
(-1.8) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176297_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18656
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.O NCBI
Target Description Y71G12B.O /REP_DB=WormBase Gene ID /WP=CE22926 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058474(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058474 NCBI Caenorhabditis elegans Male ABnormal family member (mab-20) (mab-20) mRNA, complete cds. 11/11 None
SNAP00000001771 ENSEMBL cdna:SNAP chromosome:CEL140:I:1644872:1651256:-1 11/11 None
GENEFINDER00000001810 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1644872:1651256:-1 11/11 None
Y71G12B.20a ENSEMBL cdna:known chromosome:CEL140:I:1644589:1651379:-1 gene:Y71G12B.20 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171727 2 1 NM_058474 176297_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1644871-1651256(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y71G12B.20
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73921 Male abnormal protein 20, isoform a [Caenorhabditis elegans] ref|NP_490875.1| Male ABnormal family member (mab-20) [Caenorhabditis elegans] 0.0
blast AAF60253 semaphorin-2a [Caenorhabditis elegans] 0.0
blast CAE74405 Hypothetical protein CBG22137 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001627 EMBL-EBI Semaphorin/CD100 antigen 5.2E-59
Pfam IPR002165 EMBL-EBI Plexin 2.8E-5
Sequence
Target Sequence 
>C. ELEGANS:176297_S_AT
gctcgatgctcggagcaaccatcctgtgctctctgctcccttgatccctactgcagctgg
aatgcggtcaactcgaaatgctcgctgaaaacaaagacaaatgagaaatcagtcggctgg
atttcgagctcatgggctggaagaatatcaccagagtgctccgctgtcgagaagcttacc
gttaaggatgtctacttgggcgacgggctccgtttggttggagccaagaatggggtgtgg
cagaaggatgggcggagtgttgagagtgggcaacggcacgtggtgactcggaatggggaa
ttggtggtgttggatgcgcagttggaggatgctggaacctatgaatgtttgagagataat
attattcttgttagagcaagaattgttgttcatgaaaactgtgcccgcccgacaagtgtc
gccgaatatcgttcgtgccaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCGATGCTCGGAGCAACCATCCT 627 295 1441 Antisense
ACTGCAGCTGGAATGCGGTCAACTC 249 95 1490 Antisense
GCGGTCAACTCGAAATGCTCGCTGA 207 293 1504 Antisense
CAGTCGGCTGGATTTCGAGCTCATG 577 207 1550 Antisense
AGAATATCACCAGAGTGCTCCGCTG 477 75 1582 Antisense
AGTGCTCCGCTGTCGAGAAGCTTAC 99 61 1595 Antisense
GCGACGGGCTCCGTTTGGTTGGAGC 443 285 1640 Antisense
CGGCACGTGGTGACTCGGAATGGGG 168 243 1714 Antisense
TGGTGGTGTTGGATGCGCAGTTGGA 91 553 1742 Antisense
GTTGTTCATGAAAACTGTGCCCGCC 109 439 1825 Antisense
GTCGCCGAATATCGTTCGTGCCAAC 128 475 1858 Antisense
Sequence Source Affymetrix Proprietary Database