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[176296_at]

Description Y22D7AR.G /REP_DB=WormBase Gene ID /WP=CE26513 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 28      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 42.1
(1.8)
A 		7.3
(-2.7)
A 		4.8
(-3)
A 		51.2
(3)
A 		46
B 2.6
(-3)
A 		13.8
(-1.2)
A 		7.9
(-2.2)
A 		40.1
(3)
A 		38
C 7.5
(-3)
A 		9.4
(-2.3)
A 		13.5
(-0.7)
A 		22.9
(3)
A 		15
avr 17.4
(-1.2) 		10.2
(-2.7) 		8.7
(-3) 		38.1
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 35.4
(3)
A 		22.7
(0.5)
A 		6.1
(-2.7)
A 		4.5
(-3)
A 		16.9
(-0.6)
A 		5.1
(-2.9)
A 		31
B 8.1
(-2.9)
A 		9.8
(-2.5)
A 		30.9
(3)
A 		8.6
(-2.8)
A 		7.9
(-3)
A 		19
(-0.1)
A 		23
C 22
(1.5)
A 		8.5
(-1.6)
A 		2.3
(-3)
A 		4.8
(-2.4)
A 		16.7
(0.3)
A 		28.5
(3)
A 		26
avr 21.8
(3) 		13.7
(-0.1) 		13.1
(-0.3) 		6
(-3) 		13.8
(-0) 		17.5
(1.4) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.3
(3)
A 		1.6
(-2.8)
A 		1.2
(-3)
A 		7.5
(-0.3)
A 		14
B 0.8
(-3)
A 		3.4
(-1)
A 		1.8
(-2.2)
A 		8.6
(3)
A 		8
C 2.5
(-3)
A 		2.7
(-2.5)
A 		4.7
(3)
A 		3.9
(0.8)
A 		2
avr 6.2
(2.3) 		2.6
(-3) 		2.6
(-3) 		6.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 6.5
(1.6)
A 		8.1
(3)
A 		1.3
(-2.8)
A 		1.1
(-3)
A 		5.1
(0.4)
A 		1.3
(-2.8)
A 		7
B 2.8
(-2.4)
A 		3.3
(-1.8)
A 		7.5
(3)
A 		2.3
(-3)
A 		3.2
(-2)
A 		7.1
(2.5)
A 		5
C 8.1
(2.1)
A 		2.6
(-1.7)
A 		0.6
(-3)
A 		1
(-2.7)
A 		5.4
(0.2)
A 		9.5
(3)
A 		9
avr 5.8
(2.7) 		4.7
(1.3) 		3.1
(-0.9) 		1.5
(-3) 		4.6
(1.1) 		6
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176296_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19006
Sequence Type Exemplar sequence
Representative Public ID Y22D7AR.G NCBI
Target Description Y22D7AR.G /REP_DB=WormBase Gene ID /WP=CE26513 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065043(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065043 NCBI Caenorhabditis elegans Y22D7AR.7 (Y22D7AR.7) mRNA, complete cds. 11/11 None
GENEFINDER00000025843 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1682785:1693060:-1 11/11 None
SNAP00000025832 ENSEMBL cdna:SNAP chromosome:CEL140:III:1683619:1688088:-1 11/11 None
Y22D7AR.7 ENSEMBL cdna:known chromosome:CEL140:III:1683619:1688088:-1 gene:Y22D7AR.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1683618-1688088(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AR.7
Entrez Gene 189514 Entrez gene
SwissProt Q9BKX7 EMBL-EBI
WormBase CE26513 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29868 Hypothetical protein Y22D7AR.7 [Caenorhabditis elegans] ref|NP_497444.1| Y22D7AR.7 [Caenorhabditis elegans] 0.0
blast AAO91683 Hypothetical protein Y22D7AR.14 [Caenorhabditis elegans] ref|NP_001022826.1| Y22D7AR.14 [Caenorhabditis elegans] 1.0E-177
blast AAO91684 Serpentine receptor, class d (delta) protein 64 [Caenorhabditis elegans] ref|NP_497445.2| Serpentine Receptor, class D (delta) family member (srd-64) [Caenorhabditis elegans] 1.0E-117
blast AAK29876 Hypothetical protein Y22D7AR.12 [Caenorhabditis elegans] ref|NP_497451.1| Y22D7AR.12 [Caenorhabditis elegans] 2.0E-48
blast AAK21448 Hypothetical protein R06B10.1 [Caenorhabditis elegans] ref|NP_497308.1| R06B10.1 [Caenorhabditis elegans] 5.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 6.7E-18
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.4E-35
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.4E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497444.1 1 356-378
Y22D7AR.7 1 356-378
GENEFINDER00000025843 6 66-85,120-142,174-196,201-223,304-326,985-1007
SNAP00000025832 1 356-378
Sequence
Target Sequence 
>C. ELEGANS:176296_AT
atgttctgcaagtacttcccggaaagtgctgatgggattgtaaagatcggaggttttaag
attagttgctgtgatatggaagaggatgaggatgtggaagaaaggacacttgtggttcag
tacgaaaaagagaaagagttcaccgtaacccaccacctctacaaatcctggtcaatgtgc
tccgtccccgagaactcgaaaactttgctcaagctcatcaagaatgtgaagtgttccaaa
accccggttattgtgcatggaatctcgaggaacattgatcttggctatcaaatgttcgcg
ttgaacaagaaaaccacatttgtaagtgttctgaaatctctgagatctcactgtgaaggt
ccggttatgcagccgattgagtatggatttgcgatctatgggatttttatgtatgcgttt
gaggcctacgacccaactgccgttccagacgatatcacaaaaattatgaattacctgacg
gaagccttcaccacttggttcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTCTGCAAGTACTTCCCGGAAA 118 47 1708 Antisense
CAAATCCTGGTCAATGTGCTCCGTC 642 193 1869 Antisense
GAATGTGAAGTGTTCCAAAACCCCG 670 329 1929 Antisense
AAACCCCGGTTATTGTGCATGGAAT 693 123 1946 Antisense
GATCTTGGCTATCAAATGTTCGCGT 235 421 1984 Antisense
GATCTCACTGTGAAGGTCCGGTTAT 700 417 2051 Antisense
GGTCCGGTTATGCAGCCGATTGAGT 275 499 2065 Antisense
TGTATGCGTTTGAGGCCTACGACCC 172 553 2117 Antisense
CCAACTGCCGTTCCAGACGATATCA 5 277 2140 Antisense
GAATTACCTGACGGAAGCCTTCACC 577 321 2175 Antisense
GAAGCCTTCACCACTTGGTTCAAAA 99 339 2188 Antisense
Sequence Source Affymetrix Proprietary Database