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[176295_at]

Description Y22D7AR.E /REP_DB=WormBase Gene ID /WP=CE23413 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 40      4grp_total > 63      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 88.6
(3)
A 		69.5
(-0.4)
A 		54.7
(-3)
A 		85.2
(2.4)
A 		34
B 47.8
(1.9)
A 		21.4
(-1.5)
A 		56.4
(3)
A 		9.3
(-3)
A 		47
C 80.6
(2.4)
A 		49.3
(-3)
A 		83.9
(3)
A 		63.2
(-0.6)
A 		35
avr 72.3
(3) 		46.7
(-3) 		65
(1.3) 		52.6
(-1.6) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 55.3
(-0.2)
A 		85.8
(1.9)
A 		101.5
(3)
A 		83.1
(1.7)
A 		52.9
(-0.3)
A 		13.6
(-3)
A 		88
B 66.6
(0.6)
A 		93.6
(3)
A 		68.4
(0.8)
A 		83.7
(2.1)
A 		25.8
(-3)
A 		38.6
(-1.9)
A 		68
C 62.2
(-2.7)
A 		67
(-2.3)
A 		99.1
(0.3)
A 		132.5
(3)
A 		73.7
(-1.7)
A 		57.9
(-3)
A 		75
avr 61.4
(-0.7) 		82.1
(1.3) 		89.7
(2) 		99.8
(3) 		50.8
(-1.7) 		36.7
(-3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 32.3
(3)
A 		15.1
(-2.2)
A 		14.3
(-2.5)
A 		12.5
(-3)
A 		20
B 15.2
(3)
A 		5.3
(-1.5)
A 		13.1
(2)
A 		2
(-3)
A 		13
C 26.7
(2.2)
A 		14.2
(-1.9)
A 		29.2
(3)
A 		10.7
(-3)
A 		19
avr 24.7
(3) 		11.5
(-1.9) 		18.9
(0.9) 		8.4
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 10.2
(-1.5)
A 		30.5
(3)
A 		22.1
(1.1)
A 		21.1
(0.9)
A 		16
(-0.2)
A 		3.3
(-3)
A 		27
B 23.2
(0.7)
A 		31.2
(3)
A 		16.6
(-1.2)
A 		22.2
(0.4)
A 		10.5
(-3)
A 		14.4
(-1.9)
A 		21
C 23.1
(0.1)
A 		20.5
(-2.1)
A 		25.2
(1.8)
A 		26.6
(3)
A 		23.9
(0.7)
A 		19.4
(-3)
A 		7
avr 18.8
(-0.4) 		27.4
(3) 		21.3
(0.6) 		23.3
(1.4) 		16.8
(-1.2) 		12.4
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176295_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19012
Sequence Type Exemplar sequence
Representative Public ID Y22D7AR.E NCBI
Target Description Y22D7AR.E /REP_DB=WormBase Gene ID /WP=CE23413 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065045(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065045 NCBI Caenorhabditis elegans Y22D7AR.9 (Y22D7AR.9) mRNA, complete cds. 11/11 None
SNAP00000025833 ENSEMBL cdna:SNAP chromosome:CEL140:III:1688133:1698909:-1 11/11 None
GENEFINDER00000025840 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1697728:1698909:-1 11/11 None
Y22D7AR.9 ENSEMBL cdna:known chromosome:CEL140:III:1697210:1698972:-1 gene:Y22D7AR.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1697727-1698909(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AR.9
Entrez Gene 189515 Entrez gene
SwissProt Q9BKX6 EMBL-EBI
WormBase CE23413 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO91685 Hypothetical protein Y22D7AR.9 [Caenorhabditis elegans] ref|NP_497446.3| Y22D7AR.9 [Caenorhabditis elegans] 1.0E-176
blast AAO91685 Hypothetical protein Y22D7AR.9 [Caenorhabditis elegans] ref|NP_497446.3| Y22D7AR.9 [Caenorhabditis elegans] 1.0E-168
blast AAO91683 Hypothetical protein Y22D7AR.14 [Caenorhabditis elegans] ref|NP_001022826.1| Y22D7AR.14 [Caenorhabditis elegans] 1.0E-163
blast CAB03489 Hypothetical protein ZC47.4 [Caenorhabditis elegans] ref|NP_497367.1| ZC47.4 [Caenorhabditis elegans] 1.0E-34
blast AAC68927 Hypothetical protein T12B5.1 [Caenorhabditis elegans] ref|NP_497307.1| T12B5.1 [Caenorhabditis elegans] 2.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.8E-17
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.7E-38
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.3E-12
Sequence
Target Sequence 
>C. ELEGANS:176295_AT
catcccatgaacttcttatgcctggaagatgaccctttctacgaggagcagctacttgga
gcatttctatttagatacctgccaggaagcttaagagttaaggagttgaagctggttcgt
ctgtacttcgaggagatagttgaaattcttcaatactttgctgcaaatttcctggaaaga
gtgatcctaaaccatcccacagaaggggatgggattgaagatctgttccagttggagcaa
ttccagaaatctcgagacttttacatggaatcttatgcttttgacactacgaaaacttcg
atcaatcaatttttccatttcaagaggtttaaaattaaagttgacaagcttttaaaggag
gatgcaatcaagtgtagagacgatcttctaaaacgcgatactttcaactattgtgcaatg
aatttcgatgaaaactgctcggatcccgttgaattcgcaaaagtgttccagcccgagtac
tctggagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCCCATGAACTTCTTATGCCTGG 395 211 340 Antisense
ATGCCTGGAAGATGACCCTTTCTAC 666 35 357 Antisense
GACCCTTTCTACGAGGAGCAGCTAC 494 381 370 Antisense
GAGCAGCTACTTGGAGCATTTCTAT 509 389 385 Antisense
GAAGCTGGTTCGTCTGTACTTCGAG 574 341 447 Antisense
GATCCTAAACCATCCCACAGAAGGG 478 109 522 Antisense
GAATCTTATGCTTTTGACACTACGA 33 329 607 Antisense
AACGCGATACTTTCAACTATTGTGC 599 145 731 Antisense
ACTGCTCGGATCCCGTTGAATTCGC 172 99 773 Antisense
GAATTCGCAAAAGTGTTCCAGCCCG 563 323 790 Antisense
GTTCCAGCCCGAGTACTCTGGAGAG 192 439 804 Antisense
Sequence Source Affymetrix Proprietary Database