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[176294_at]

Description Y22D7AR.I /REP_DB=WormBase Gene ID /WP=CE23430 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 54      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 49.7
(-0.8)
M 		28.2
(-2.8)
A 		26.2
(-3)
A 		90.4
(3)
P 		64
B 50
(1.9)
P 		13.5
(-3)
A 		33.5
(-0.3)
A 		58.5
(3)
P 		45
C 64.8
(0.4)
A 		7.8
(-3)
A 		36.2
(-1.3)
A 		108
(3)
P 		100
avr 54.8
(0.3) 		16.5
(-3) 		32
(-1.7) 		85.6
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 40.2
(0.3)
A 		8.3
(-2.6)
A 		69.5
(3)
A 		4.1
(-3)
A 		30.8
(-0.6)
A 		12.8
(-2.2)
A 		65
B 28.4
(-1)
A 		6.7
(-3)
A 		50.5
(1)
A 		30.8
(-0.8)
A 		49.8
(0.9)
A 		73.2
(3)
A 		67
C 16.9
(-1.5)
A 		55.9
(3)
A 		3.7
(-3)
A 		5.4
(-2.8)
A 		39.9
(1.2)
A 		7.8
(-2.5)
A 		52
avr 28.5
(0.3) 		23.6
(-0.8) 		41.2
(3) 		13.4
(-3) 		40.2
(2.8) 		31.3
(0.9) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 18.1
(3)
M 		6.1
(-3)
A 		6.9
(-2.6)
A 		13.2
(0.5)
P 		12
B 16
(3)
P 		3.3
(-3)
A 		7.8
(-0.9)
A 		12.5
(1.3)
P 		13
C 21.5
(3)
A 		2.2
(-3)
A 		12.6
(0.2)
A 		18.2
(2)
P 		19
avr 18.5
(3) 		3.9
(-3) 		9.1
(-0.9) 		14.6
(1.4) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 7.4
(-0.3)
A 		2.9
(-2.2)
A 		15.1
(3)
A 		1
(-3)
A 		9.3
(0.5)
A 		3.1
(-2.1)
A 		14
B 9.9
(-1.2)
A 		2.2
(-3)
A 		12.3
(-0.6)
A 		8.2
(-1.6)
A 		20.2
(1.3)
A 		27.3
(3)
A 		25
C 6.3
(-1)
A 		17.1
(3)
A 		1
(-3)
A 		1.1
(-3)
A 		12.9
(1.4)
A 		2.6
(-2.4)
A 		16
avr 7.9
(-0.5) 		7.4
(-0.8) 		9.5
(0.4) 		3.4
(-3) 		14.1
(3) 		11
(1.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176294_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18998
Sequence Type Exemplar sequence
Representative Public ID Y22D7AR.I NCBI
Target Description Y22D7AR.I /REP_DB=WormBase Gene ID /WP=CE23430 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065041(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065041 NCBI Caenorhabditis elegans Y22D7AR.5 (Y22D7AR.5) mRNA, complete cds. 11/11 None
GENEFINDER00000025844 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1665422:1668608:-1 10/11 None
Y22D7AR.5 ENSEMBL cdna:known chromosome:CEL140:III:1667817:1668608:-1 gene:Y22D7AR.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1667816-1668608(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AR.5
Entrez Gene 189513 Entrez gene
SwissProt Q9BKX9 EMBL-EBI
WormBase CE23430 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15671 oxygen transport inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29871 Hypothetical protein Y22D7AR.4 [Caenorhabditis elegans] ref|NP_497441.1| Y22D7AR.4 [Caenorhabditis elegans] 4.0E-81
blast CAE66460 Hypothetical protein CBG11737 [Caenorhabditis briggsae] 1.0E-52
blast AAK29870 Hypothetical protein Y22D7AR.5 [Caenorhabditis elegans] ref|NP_497442.1| Y22D7AR.5 [Caenorhabditis elegans] 4.0E-44
blast CAE66459 Hypothetical protein CBG11736 [Caenorhabditis briggsae] 1.0E-35
blast AAK29872 Hypothetical protein Y22D7AR.3 [Caenorhabditis elegans] ref|NP_497440.1| Y22D7AR.3 [Caenorhabditis elegans] 5.0E-28
blast CAE65561 Hypothetical protein CBG10551 [Caenorhabditis briggsae] 7.0E-12
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 1.79999995231628
Pfam IPR000971 EMBL-EBI Globin 8.5E-7
Pfam IPR000971 EMBL-EBI Globin 5.1E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000025844 2 274-296,339-361
Sequence
Target Sequence 
>C. ELEGANS:176294_AT
atggagtcattatcccatttgacaccgatagacagggaaattctgaacaagtcctgggga
attgtgtccaaagacatgcaacaagtggctgtaaatatattccaaatgatattcgaacaa
gctcccgatgcaaaactcatgttctccttcatgatgaaagactataaagaggacaaaaag
agcaacgagttcatttttcacgcagtgcggtttttgcaggtgggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGAGTCATTATCCCATTTGACAC 505 51 13 Antisense
ATCCCATTTGACACCGATAGACAGG 203 37 24 Antisense
GAAATTCTGAACAAGTCCTGGGGAA 323 363 49 Antisense
GTCCTGGGGAATTGTGTCCAAAGAC 660 475 63 Antisense
CAAAGACATGCAACAAGTGGCTGTA 291 193 81 Antisense
GATATTCGAACAAGCTCCCGATGCA 506 427 120 Antisense
GAACAAGCTCCCGATGCAAAACTCA 345 353 127 Antisense
ATGCAAAACTCATGTTCTCCTTCAT 106 45 140 Antisense
GAGCAACGAGTTCATTTTTCACGCA 585 389 192 Antisense
GAGTTCATTTTTCACGCAGTGCGGT 451 397 199 Antisense
GCAGTGCGGTTTTTGCAGGTGGGTT 439 309 214 Antisense
Sequence Source Affymetrix Proprietary Database