[Home] | [Total List]

[176293_at]

Description Y71G12B.R /REP_DB=WormBase Gene ID /WP=CE22922 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 84      4grp_total > 57      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 506
1 2 3 4 range
A 214.3
(-0.9)
A 		381.2
(1.8)
A 		456
(3)
P 		86.2
(-3)
A 		370
B 210.6
(-1.4)
A 		361.7
(0.4)
A 		578.1
(3)
P 		81.3
(-3)
A 		497
C 167.3
(-2)
A 		445.2
(1.3)
A 		587.2
(3)
P 		84.2
(-3)
A 		503
avr 197.4
(-1.5) 		396
(1.1) 		540.4
(3) 		83.9
(-3) 		457

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 176.7
(-3)
A 		281.3
(0.1)
A 		289.8
(0.4)
A 		377.2
(3)
A 		356.2
(2.4)
P 		290.1
(0.4)
A 		201
B 219.6
(-3)
A 		249.6
(-1.5)
A 		298
(0.8)
A 		273.5
(-0.4)
A 		342.8
(3)
P 		283
(0.1)
P 		123
C 163.5
(-3)
A 		286.6
(0.1)
A 		264.2
(-0.5)
A 		320.1
(0.9)
A 		254.3
(-0.7)
A 		405.1
(3)
P 		242
avr 186.6
(-3) 		272.5
(0.7) 		284
(1.2) 		323.6
(2.9) 		317.8
(2.6) 		326.1
(3) 		140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 78
(0.7)
A 		82.7
(0.9)
A 		119.2
(3)
P 		12.6
(-3)
A 		107
B 67.2
(-0.4)
A 		89.3
(0.7)
A 		134
(3)
P 		17.3
(-3)
A 		117
C 55.4
(-1.7)
A 		128
(0.6)
A 		204.7
(3)
P 		14.2
(-3)
A 		191
avr 66.9
(-0.7) 		100
(0.7) 		152.6
(3) 		14.7
(-3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 32.6
(-3)
A 		100
(2.4)
A 		63.1
(-0.6)
A 		95.7
(2.1)
A 		107.5
(3)
P 		70.6
(0)
A 		75
B 76.4
(-2.6)
A 		83.1
(-2)
A 		72.4
(-3)
A 		72.5
(-3)
A 		139.3
(3)
P 		105.5
(-0)
P 		67
C 60.6
(-3)
A 		87.4
(-0.9)
A 		67.3
(-2.5)
A 		64.4
(-2.7)
A 		82.3
(-1.3)
A 		135.6
(3)
P 		75
avr 56.5
(-3) 		90.2
(0.8) 		67.6
(-1.7) 		77.5
(-0.6) 		109.7
(3) 		103.9
(2.3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176293_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18679
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.R NCBI
Target Description Y71G12B.R /REP_DB=WormBase Gene ID /WP=CE22922 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058478(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058478 NCBI Caenorhabditis elegans Y71G12B.17 (Y71G12B.17) mRNA, complete cds. 10/11 None
GENEFINDER00000001817 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1666184:1670004:1 10/11 None
Y71G12B.17 ENSEMBL cdna:known chromosome:CEL140:I:1667502:1669765:1 gene:Y71G12B.17 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001777 2/11 Cross Hyb Matching Probes None
SNAP00000001778 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1666070-1669751(+) 82.03 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71G12B.17
Entrez Gene 171730 Entrez gene
SwissProt Q95XP0 EMBL-EBI
WormBase CE26250 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK73916 Hypothetical protein Y71G12B.17 [Caenorhabditis elegans] ref|NP_490879.2| Y71G12B.17 [Caenorhabditis elegans] 1.0E-161
blast AAK73916 Hypothetical protein Y71G12B.17 [Caenorhabditis elegans] ref|NP_490879.2| Y71G12B.17 [Caenorhabditis elegans] 1.0E-151
blast CAE74413 Hypothetical protein CBG22145 [Caenorhabditis briggsae] 1.0E-140
blast CAE74413 Hypothetical protein CBG22145 [Caenorhabditis briggsae] 1.0E-131
blast CAE65006 Hypothetical protein CBG09844 [Caenorhabditis briggsae] 7.0E-65
blast CAE65006 Hypothetical protein CBG09844 [Caenorhabditis briggsae] 7.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR001666 EMBL-EBI Phosphatidylinositol transfer protein 1.6E-78
Pfam IPR001666 EMBL-EBI Phosphatidylinositol transfer protein 7.6E-83
Sequence
Target Sequence 
>C. ELEGANS:176293_AT
gctcaaaagctccgtgggttctgcaaaaacttctgccaccggaggcttttgtgatttatg
aggagagttggaacgcctatccatattgtaaaactgtattgactgtgagtttgaattttt
ccaatcccggttacatgaaggacaatttccatcaaatcattgaaaccattcatttggacg
ataacggaagttctgaaaatccgttggatggccccgagaagcgtgagattgtgttcatcg
atattgcggataatgacatttttggaacgaaaaattacgaaaaagagaaagacgcgcggc
ttttcgaggcggaaactgtcgagaggggaccattggatgaggattggattgatgaacatg
atccggtaatgtgctgctacaagctggtctcgtgtcatttcaaatggacgggtcttcaaa
gaatggttgaaaaaacggtgcataagcaatatccacgtgtattcggtcttatgcatcgtg
acgcgtacgttcttctggataactggttcaatatgtcaatggaatcgattcgtgaatacg
agcgagcgaccggcgatattcttcgtaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCAAAAGCTCCGTGGGTTCTGCA 560 301 536 Antisense
GGTTCTGCAAAAACTTCTGCCACCG 323 507 552 Antisense
TCTGCCACCGGAGGCTTTTGTGATT 36 609 567 Antisense
TGAATTTTTCCAATCCCGGTTACAT 423 571 647 Antisense
TTGGATGGCCCCGAGAAGCGTGAGA 534 707 739 Antisense
AGAGAAAGACGCGCGGCTTTTCGAG 397 69 819 Antisense
GATCCGGTAATGTGCTGCTACAAGC 317 415 895 Antisense
AAGCTGGTCTCGTGTCATTTCAAAT 155 149 916 Antisense
TCGGTCTTATGCATCGTGACGCGTA 426 605 998 Antisense
GTGACGCGTACGTTCTTCTGGATAA 346 483 1013 Antisense
GCGACCGGCGATATTCTTCGTAAGC 625 287 1081 Antisense
Sequence Source Affymetrix Proprietary Database