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[176292_at]

Description Y22D7AR.C /REP_DB=WormBase Gene ID /WP=CE26511 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 54      4grp_total > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 8.1
(-2.7)
A 		38.3
(3)
A 		6.3
(-3)
A 		11
(-2.1)
A 		32
B 6.3
(-2.5)
A 		8.3
(-2.1)
A 		35.9
(3)
A 		3.6
(-3)
A 		32
C 32.7
(2.9)
A 		33.3
(3)
A 		4.7
(-3)
A 		5.5
(-2.8)
A 		29
avr 15.7
(-0.3) 		26.6
(3) 		15.6
(-0.3) 		6.7
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 18
(-0.7)
A 		3.6
(-3)
A 		3.7
(-2.9)
A 		3.3
(-3)
A 		41.4
(3)
A 		4.1
(-2.9)
A 		38
B 40.4
(3)
A 		4.1
(-2.7)
A 		6
(-2.4)
A 		2.3
(-2.9)
A 		1.9
(-3)
A 		31.8
(1.7)
A 		39
C 4.7
(-2.9)
A 		13.3
(-2.1)
A 		67.3
(3)
A 		30
(-0.5)
A 		4
(-3)
A 		39.7
(0.4)
A 		63
avr 21
(1.5) 		7
(-3) 		25.7
(3) 		11.9
(-1.4) 		15.8
(-0.2) 		25.2
(2.8) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.9
(-1.8)
A 		8.3
(3)
A 		1.6
(-3)
A 		1.6
(-3)
A 		7
B 2
(-2)
A 		2.1
(-2)
A 		8.3
(3)
A 		0.8
(-3)
A 		8
C 10.8
(3)
A 		9.6
(2.3)
A 		1.6
(-2.6)
A 		0.9
(-3)
A 		10
avr 5.2
(1.4) 		6.7
(3) 		3.8
(-0.1) 		1.1
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 3.3
(-1.7)
A 		1.3
(-2.7)
A 		0.8
(-3)
A 		0.8
(-3)
A 		12.5
(3)
A 		1
(-2.9)
A 		12
B 14.1
(3)
A 		1.4
(-2.6)
A 		1.4
(-2.6)
A 		0.6
(-3)
A 		0.8
(-2.9)
A 		11.8
(2)
A 		14
C 1.7
(-2.8)
A 		4.1
(-1.9)
A 		17.1
(3)
A 		6
(-1.2)
A 		1.3
(-3)
A 		13.3
(1.6)
A 		16
avr 6.4
(0.8) 		2.3
(-3) 		6.4
(0.8) 		2.5
(-2.8) 		4.9
(-0.6) 		8.7
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176292_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18999
Sequence Type Exemplar sequence
Representative Public ID Y22D7AR.C NCBI
Target Description Y22D7AR.C /REP_DB=WormBase Gene ID /WP=CE26511 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065050(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065050 NCBI Caenorhabditis elegans Y22D7AR.12 (Y22D7AR.12) mRNA, complete cds. 11/11 None
SNAP00000025838 ENSEMBL cdna:SNAP chromosome:CEL140:III:1716518:1721893:-1 11/11 None
GENEFINDER00000025846 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1716518:1727163:-1 11/11 None
Y22D7AR.12 ENSEMBL cdna:known chromosome:CEL140:III:1716518:1721899:-1 gene:Y22D7AR.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1716517-1718600(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AR.12
Entrez Gene 189518 Entrez gene
SwissProt Q9BKX0 EMBL-EBI
WormBase CE27247 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29876 Hypothetical protein Y22D7AR.12 [Caenorhabditis elegans] ref|NP_497451.1| Y22D7AR.12 [Caenorhabditis elegans] 0.0
blast AAK21448 Hypothetical protein R06B10.1 [Caenorhabditis elegans] ref|NP_497308.1| R06B10.1 [Caenorhabditis elegans] 0.0
blast AAK21448 Hypothetical protein R06B10.1 [Caenorhabditis elegans] ref|NP_497308.1| R06B10.1 [Caenorhabditis elegans] 1.0E-153
blast AAK21448 Hypothetical protein R06B10.1 [Caenorhabditis elegans] ref|NP_497308.1| R06B10.1 [Caenorhabditis elegans] 1.0E-150
blast AAB54270 Hypothetical protein R155.4 [Caenorhabditis elegans] ref|NP_497486.2| R155.4 [Caenorhabditis elegans] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.6E-21
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 7.4E-44
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.6E-27
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 7.4E-44
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.8E-9
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.5E-23
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 7.4E-44
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000025838 1 716-738
GENEFINDER00000025846 3 151-173,303-325,1084-1106
Sequence
Target Sequence 
>C. ELEGANS:176292_AT
cactttcaatcactactggtaccgtggatggggaaagtcgagcatcccagagagcccgaa
gactatgctggccttgttggatatggtgaacgcgagcaagacgccagtgattgtgcactg
ctatgatgggagatcaagatccgcatgtttcgcatacatggaactcgcttgtcaaatggt
ggccaaaaacgactcagttaccagtagagttgctttgaaagctctgatgaaaatgcgcgc
aaacttatttgtgaaagatgaagagtatgcgtttgcaatctatggagcaatgatgcgtct
tatggaggtaggaaaagcaacgtgccgcaacgaattcgaagagtatcagcaatggtacaa
cgagtggtatcaaactctgttcaatgcaagaaagacatcccttgaggaaaaggcaaaagg
tgacatcaaactgaaagcagcgcgtgagaaaattcaagcccaacaaaaagccacaatgct
tgcaattgccgcagccaaagctcgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTTTCAATCACTACTGGTACCGT 449 197 495 Antisense
GGAAAGTCGAGCATCCCAGAGAGCC 608 525 526 Antisense
GAGAGCCCGAAGACTATGCTGGCCT 327 395 544 Antisense
GACTATGCTGGCCTTGTTGGATATG 530 371 555 Antisense
GAGCAAGACGCCAGTGATTGTGCAC 330 391 588 Antisense
GATCAAGATCCGCATGTTTCGCATA 676 421 626 Antisense
GTTTCGCATACATGGAACTCGCTTG 460 451 641 Antisense
GGAACTCGCTTGTCAAATGGTGGCC 678 527 654 Antisense
AAGCAACGTGCCGCAACGAATTCGA 124 151 809 Antisense
GCCACAATGCTTGCAATTGCCGCAG 396 279 964 Antisense
CAATTGCCGCAGCCAAAGCTCGAAA 659 179 977 Antisense
Sequence Source Affymetrix Proprietary Database