[Home] | [Total List]

[176291_at]

Description C06E1.11 /REP_DB=WormBase Gene ID /WP=CE00056 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 29.2
(-1)
A 		6.3
(-3)
A 		27.7
(-1.1)
A 		73.6
(3)
A 		67
B 21.6
(3)
A 		4.4
(-2.3)
A 		11.9
(-0)
A 		2.3
(-3)
A 		19
C 13.1
(-2.7)
A 		22.5
(-1.3)
A 		11.3
(-3)
A 		51.1
(3)
A 		40
avr 21.3
(-1) 		11.1
(-3) 		17
(-1.9) 		42.3
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 4.3
(-2.8)
A 		14.7
(-1.8)
A 		39.3
(0.7)
A 		62.5
(3)
A 		22.5
(-1)
A 		2.6
(-3)
A 		60
B 19.7
(-1.1)
A 		19.8
(-1.1)
A 		2.2
(-3)
A 		58.4
(3)
A 		18.4
(-1.3)
A 		13
(-1.8)
A 		56
C 0.9
(-3)
A 		24.1
(1)
A 		10.2
(-1.4)
A 		35.4
(3)
A 		7.8
(-1.8)
A 		25.8
(1.3)
A 		35
avr 8.3
(-3) 		19.5
(-1.5) 		17.2
(-1.8) 		52.1
(3) 		16.2
(-1.9) 		13.8
(-2.2) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.6
(2.9)
A 		1.4
(-3)
A 		7.2
(0.7)
A 		10.8
(3)
A 		9
B 6.9
(3)
A 		1.1
(-2.4)
A 		2.8
(-0.8)
A 		0.5
(-3)
A 		6
C 4.3
(-2.5)
A 		6.5
(0.3)
A 		3.9
(-3)
A 		8.6
(3)
A 		5
avr 7.3
(3) 		3
(-3) 		4.6
(-0.8) 		6.6
(2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		5.2
(-1.2)
A 		8.6
(0.2)
A 		15.8
(3)
A 		6.8
(-0.6)
A 		0.6
(-3)
A 		15
B 6.8
(-0.5)
A 		6.6
(-0.6)
A 		0.5
(-3)
A 		15.5
(3)
A 		7.5
(-0.2)
A 		4.9
(-1.2)
A 		15
C 0.3
(-3)
A 		7.4
(2.1)
A 		2.6
(-1.3)
A 		7.1
(1.9)
A 		2.5
(-1.4)
A 		8.6
(3)
A 		8
avr 2.6
(-3) 		6.4
(-0.8) 		3.9
(-2.2) 		12.8
(3) 		5.6
(-1.2) 		4.7
(-1.8) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176291_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7531
Sequence Type Exemplar sequence
Representative Public ID C06E1.11 NCBI
Target Description C06E1.11 /REP_DB=WormBase Gene ID /WP=CE00056 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066495(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066495 NCBI Caenorhabditis elegans C06E1.11 (C06E1.11) mRNA, complete cds. 11/11 None
C06E1.11 ENSEMBL cdna:known chromosome:CEL140:III:8614665:8616113:-1 gene:C06E1.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8614659-8616108(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06E1.11
Entrez Gene 182318 Entrez gene
SwissProt P34306 EMBL-EBI
WormBase CE00056 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27927 Hypothetical protein C06E1.11 [Caenorhabditis elegans] ref|NP_498896.1| C06E1.11 [Caenorhabditis elegans] sp|P34306|YKQA_CAEEL Hypothetical protein C06E1.11 in chromosome III 1.0E-141
blast AAB37563 Hypothetical protein C13G5.2 [Caenorhabditis elegans] ref|NP_498897.1| C13G5.2 [Caenorhabditis elegans] sp|P34327|YKX2_CAEEL Hypothetical protein C13G5.2 in chromosome III 5.0E-23
blast AAK68682 Hypothetical protein C03B1.14 [Caenorhabditis elegans] ref|NP_509067.1| C03B1.14 [Caenorhabditis elegans] 1.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498896.1 3 112-134,283-305,309-331
C06E1.11 3 112-134,283-305,309-331
Sequence
Target Sequence 
>C. ELEGANS:176291_AT
ggagtttgtagctgccaacttcaaattgttctgagcaacgacgctgctaccaaattatgt
gcaattttggcggaaaagattcaaagtccatctcaaacttcaaattatgcatttaattct
tacctttctggtgcagcagttcacatatcatcagctggagctcaaacagctggaacaatt
ggcggagagggtctcacaacgatcgcgcaagctgctccagttttacaagttgctgcagtt
gaatacgatgcttatcaaattgggaaaaacgtggaaaaagataaaaggagagggacaagt
aggaatactgttaagaaagtgaccactacagtagccacgtacggtattggatttggtgga
gcacttgcaggtgctgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTTTGTAGCTGCCAACTTCAAA 547 517 535 Antisense
TGTTCTGAGCAACGACGCTGCTACC 660 561 561 Antisense
ACGACGCTGCTACCAAATTATGTGC 423 91 572 Antisense
ATGCATTTAATTCTTACCTTTCTGG 14 43 641 Antisense
ACCTTTCTGGTGCAGCAGTTCACAT 623 85 656 Antisense
GTTCACATATCATCAGCTGGAGCTC 335 445 673 Antisense
GGAACAATTGGCGGAGAGGGTCTCA 334 529 706 Antisense
AAGCTGCTCCAGTTTTACAAGTTGC 326 149 743 Antisense
GAAAGTGACCACTACAGTAGCCACG 513 359 849 Antisense
GTAGCCACGTACGGTATTGGATTTG 591 455 865 Antisense
GGTGGAGCACTTGCAGGTGCTGCAA 132 499 889 Antisense
Sequence Source Affymetrix Proprietary Database