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[176290_at]

Description Y105E8B.FF /REP_DB=WormBase Gene ID /WP=CE24090 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_total > 92      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 5
(-3)
A 		6.4
(-2.5)
A 		11.4
(-0.9)
A 		23.4
(3)
A 		18
B 5.8
(-3)
A 		33.1
(3)
A 		12.3
(-1.6)
A 		27.5
(1.8)
A 		27
C 5
(-3)
A 		6.4
(-2.9)
A 		6.1
(-2.9)
A 		80.6
(3)
A 		76
avr 5.3
(-3) 		15.3
(-1.4) 		9.9
(-2.3) 		43.8
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 5.6
(-2.6)
A 		4.3
(-2.8)
A 		5.7
(-2.6)
A 		2.9
(-2.9)
A 		51.1
(3)
A 		2.3
(-3)
A 		49
B 5.5
(-2.1)
A 		5.2
(-2.2)
A 		3.9
(-2.6)
A 		22.2
(3)
A 		2.7
(-3)
A 		4
(-2.6)
A 		20
C 7.7
(0.5)
A 		11.7
(3)
A 		4.2
(-1.7)
A 		9.3
(1.5)
A 		6.8
(-0.1)
A 		2.1
(-3)
A 		10
avr 6.3
(-1.8) 		7.1
(-1.5) 		4.6
(-2.4) 		11.5
(0) 		20.2
(3) 		2.8
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.8
(-1.8)
A 		1.4
(-3)
A 		3
(1.8)
A 		3.4
(3)
A 		2
B 1.9
(-3)
A 		8.2
(3)
A 		2.9
(-2)
A 		5.9
(0.8)
A 		6
C 1.7
(-3)
A 		1.8
(-2.9)
A 		2.1
(-2.8)
A 		13.6
(3)
A 		12
avr 1.8
(-3) 		3.8
(-0.9) 		2.7
(-2.1) 		7.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1
(-2.8)
A 		1.5
(-2.6)
A 		1.2
(-2.8)
A 		0.7
(-3)
A 		15.4
(3)
A 		0.6
(-3)
A 		15
B 1.9
(-1.9)
A 		1.7
(-2.1)
A 		1
(-3)
A 		5.9
(3)
A 		1.1
(-2.9)
A 		1.5
(-2.4)
A 		5
C 2.9
(1.6)
A 		3.6
(3)
A 		1.1
(-2.2)
A 		1.9
(-0.5)
A 		2.2
(0.1)
A 		0.7
(-3)
A 		3
avr 1.9
(-1.9) 		2.3
(-1.4) 		1.1
(-2.8) 		2.8
(-0.8) 		6.2
(3) 		0.9
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176290_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18789
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.FF NCBI
Target Description Y105E8B.FF /REP_DB=WormBase Gene ID /WP=CE24090 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026530(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026530 NCBI Caenorhabditis elegans Y105E8B.11 (Y105E8B.11) mRNA, complete cds. 11/11 None
SNAP00000011729 ENSEMBL cdna:SNAP chromosome:CEL140:I:14628507:14628769:-1 11/11 None
GENEFINDER00000011749 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14628507:14628751:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14628437-14628682(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Entrez Gene 3565156 Entrez gene
SwissProt Q56VX3 EMBL-EBI
WormBase CE24090 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60844 Hypothetical protein Y105E8B.11 [Caenorhabditis elegans] ref|NP_001021701.1| Y105E8B.11 [Caenorhabditis elegans] 4.0E-26
Sequence
Target Sequence 
>C. ELEGANS:176290_AT
ggctggaatcctcgatattttcaaggatatgcttgatcgtcttgaagcaggagcaagagt
agatgttcaaacacacagacagaatccgccaggcgcgtgggcaccgatccgcgatagagt
tgttgccacattggggatgatcgatgatatcgctcgtgaagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGGAATCCTCGATATTTTCAAG 259 541 15 Antisense
AAGGATATGCTTGATCGTCTTGAAG 140 161 37 Antisense
TGCTTGATCGTCTTGAAGCAGGAGC 547 577 44 Antisense
GGAGCAAGAGTAGATGTTCAAACAC 515 519 64 Antisense
AAACACACAGACAGAATCCGCCAGG 208 129 83 Antisense
CAGACAGAATCCGCCAGGCGCGTGG 87 205 90 Antisense
GCACCGATCCGCGATAGAGTTGTTG 416 315 115 Antisense
ATCCGCGATAGAGTTGTTGCCACAT 522 37 121 Antisense
GTTGTTGCCACATTGGGGATGATCG 641 435 133 Antisense
GGGGATGATCGATGATATCGCTCGT 181 499 147 Antisense
GATCGATGATATCGCTCGTGAAGTT 511 417 153 Antisense
Sequence Source Affymetrix Proprietary Database