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[176289_s_at]

Description C26E6.9B /REP_DB=WormBase Gene ID /WP=CE01158 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 26      4grp_highest_8_8 > 52      4grp_high_8_8 > 25      6grp_highest_nonorm > 70      6grp_total > 26      4grp_total > 39      6grp_highest_sub > 01_02      6grp_cgc > 14      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 250
1 2 3 4 range
A 440
(3)
P 		300.2
(-0.8)
P 		219.3
(-3)
P 		245.4
(-2.3)
P 		221
B 468.8
(3)
P 		296.3
(-2.5)
P 		281.5
(-3)
P 		325.2
(-1.6)
P 		187
C 423.9
(2.7)
P 		271.3
(-3)
P 		272.9
(-2.9)
P 		431.7
(3)
P 		160
avr 444.2
(3) 		289.3
(-2) 		257.9
(-3) 		334.1
(-0.5) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 389.5
(3)
P 		365.2
(2.1)
P 		229.3
(-3)
P 		282.1
(-1)
P 		267.9
(-1.6)
P 		317.9
(0.3)
P 		160
B 377.7
(2.5)
P 		392.7
(3)
P 		266
(-0.8)
P 		224.3
(-2.1)
P 		193.5
(-3)
P 		263.4
(-0.9)
P 		199
C 372.6
(2.4)
P 		388.4
(3)
P 		339.3
(1.2)
P 		226.6
(-3)
P 		236.8
(-2.6)
P 		255.2
(-1.9)
P 		162
avr 379.9
(2.9) 		382.1
(3) 		278.2
(-1.2) 		244.3
(-2.5) 		232.7
(-3) 		278.8
(-1.1) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 160.2
(3)
P 		65.2
(-1.6)
P 		57.3
(-2)
P 		35.9
(-3)
P 		124
B 149.5
(3)
P 		73.2
(-2.4)
P 		65.2
(-3)
P 		69.3
(-2.7)
P 		84
C 140.3
(3)
P 		78
(-2.5)
P 		95.1
(-1)
P 		72.8
(-3)
P 		68
avr 150
(3) 		72.1
(-2.2) 		72.5
(-2.1) 		59.3
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 71.8
(-1.4)
P 		129.9
(3)
P 		49.9
(-3)
P 		71.5
(-1.4)
P 		80.8
(-0.7)
P 		77.4
(-0.9)
P 		80
B 131.4
(3)
P 		130.7
(2.9)
P 		64.6
(-2.6)
P 		59.4
(-3)
P 		78.6
(-1.4)
P 		98.2
(0.2)
P 		72
C 138.1
(3)
P 		118.5
(1.7)
P 		86.4
(-0.4)
P 		45.6
(-3)
P 		76.6
(-1)
P 		85.4
(-0.4)
P 		93
avr 113.8
(1.9) 		126.4
(3) 		67
(-2.3) 		58.8
(-3) 		78.7
(-1.2) 		87
(-0.5) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176289_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7805
Sequence Type Exemplar sequence
Representative Public ID C26E6.9B NCBI
Target Description C26E6.9B /REP_DB=WormBase Gene ID /WP=CE01158 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065638(11), NM_065639(11), NM_065640(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065638 NCBI Caenorhabditis elegans SET (trithorax/polycomb) domain containing family member (set-2) (set-2) mRNA, complete cds. 11/11 None
NM_065639 NCBI Caenorhabditis elegans SET (trithorax/polycomb) domain containing family member (set-2) (set-2) mRNA, complete cds. 11/11 None
NM_065640 NCBI Caenorhabditis elegans SET (trithorax/polycomb) domain containing family member (set-2) (set-2) mRNA, complete cds. 11/11 None
GENEFINDER00000014714 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4918092:4930092:-1 11/11 None
SNAP00000014697 ENSEMBL cdna:SNAP chromosome:CEL140:III:4922963:4929745:-1 11/11 None
C26E6.9b ENSEMBL cdna:known chromosome:CEL140:III:4922407:4925998:-1 gene:C26E6.9 11/11 None
C26E6.9a ENSEMBL cdna:known chromosome:CEL140:III:4922414:4930165:-1 gene:C26E6.9 11/11 None
C26E6.9c ENSEMBL cdna:known chromosome:CEL140:III:4922418:4930092:-1 gene:C26E6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4922962-4925956(-) 100.0 100.0
Public Domain and Genome References
Ensembl C26E6.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK67215 Set (trithorax/polycomb) domain containing protein 2, isoform c [Caenorhabditis elegans] ref|NP_498039.1| SET (trithorax/polycomb) domain containing family member (set-2) [Caenorhabditis elegans] 0.0
blast AAK67214 Set (trithorax/polycomb) domain containing protein 2, isoform a [Caenorhabditis elegans] ref|NP_498040.1| SET (trithorax/polycomb) domain containing family member (set-2) [Caenorhabditis elegans] sp|Q18221|SET2_CAEEL Protein set-2 0.0
blast H88444 protein C26E6.12 [imported] - Caenorhabditis elegans 0.0
blast AAA21163 Set (trithorax/polycomb) domain containing protein 2, isoform b [Caenorhabditis elegans] ref|NP_498041.1| SET (trithorax/polycomb) domain containing family member (set-2) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000594 EMBL-EBI UBA/THIF-type NAD/FAD binding fold 3.1E-37
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.4E-8
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.6E-54
Pfam IPR002779 EMBL-EBI Protein of unknown function DUF80 3.8E-80
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.4E-8
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.6E-54
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.6E-54
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.6E-54
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.6E-54
Sequence
Target Sequence 
>C. ELEGANS:176289_S_AT
gaatcgcatccgactgcaatcttcagtgaaagagatgaaaccgcgattcggcatcagcat
ctggccagtaaagatatgagattgctccaacgtcgattgcttacgtcacttggtgatgct
aacaatgatttcttcaagataaatcagctcaaattccgcaaaaagatgatcaagtttgca
cgttctcgtattcacggatggggtctctacgcgatggagtcgattgcaccagatgagatg
attgtggagtatataggacagacgatccgatctctggtggccgaagaacgagaaaaggct
tatgaacgtcgtggaatcggaagttcatatctgttccgaattgatctgcatcatgtgatc
gatgcaacaaagcgtggaaattttgctcgatttattaatcactcgtgccaacctaattgc
tacgcgaaggttcttacaatcgaaggcgagaagcggatagtcatctacagccgaacaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGCATCCGACTGCAATCTTCA 356 329 1648 Antisense
GAAACCGCGATTCGGCATCAGCATC 435 357 1684 Antisense
ATGAGATTGCTCCAACGTCGATTGC 610 45 1723 Antisense
TCGATTGCTTACGTCACTTGGTGAT 630 601 1740 Antisense
AAGTTTGCACGTTCTCGTATTCACG 20 157 1819 Antisense
TATTCACGGATGGGGTCTCTACGCG 451 663 1836 Antisense
TACGCGATGGAGTCGATTGCACCAG 552 649 1855 Antisense
GACAGACGATCCGATCTCTGGTGGC 290 367 1904 Antisense
ATCTGTTCCGAATTGATCTGCATCA 574 33 1976 Antisense
CTCGTGCCAACCTAATTGCTACGCG 532 231 2049 Antisense
GATAGTCATCTACAGCCGAACAATT 534 423 2103 Antisense
Sequence Source Affymetrix Proprietary Database