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[176288_at]

Description Y22D7AR.J /REP_DB=WormBase Gene ID /WP=CE23431 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 73      4grp_total > 0      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 4.6
(-3)
A 		5
(-2.8)
A 		14.2
(3)
A 		12.3
(1.8)
A 		10
B 2.4
(-3)
A 		5.1
(-2)
A 		17.7
(2.6)
A 		18.7
(3)
A 		16
C 10.9
(-1.2)
A 		7.9
(-2.7)
A 		7.2
(-3)
A 		19.8
(3)
A 		13
avr 6
(-3) 		6
(-3) 		13
(0.9) 		16.9
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.2
(-1.4)
A 		10.5
(-0.5)
A 		15.4
(1.3)
A 		3.9
(-3)
A 		19.8
(3)
A 		12.7
(0.3)
A 		16
B 3
(-3)
A 		6.9
(-1.6)
A 		16.5
(1.8)
A 		13
(0.6)
A 		19.8
(3)
A 		3.3
(-2.9)
A 		17
C 6.1
(-3)
A 		11.9
(-0.4)
A 		19.6
(3)
A 		18.2
(2.4)
A 		15.9
(1.4)
A 		8.6
(-1.9)
A 		14
avr 5.8
(-3) 		9.8
(-1.1) 		17.2
(2.4) 		11.7
(-0.2) 		18.5
(3) 		8.2
(-1.9) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.7
(-1.6)
A 		1.1
(-3)
A 		3.7
(3)
A 		1.8
(-1.4)
A 		3
B 0.8
(-3)
A 		1.3
(-2.1)
A 		4.1
(3)
A 		4
(2.8)
A 		3
C 3.6
(3)
A 		2.3
(-3)
A 		2.5
(-2.1)
A 		3.3
(1.6)
A 		1
avr 2
(-1.7) 		1.6
(-3) 		3.4
(3) 		3
(1.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.5
(-2.4)
A 		3.7
(0.2)
A 		3.4
(-0.1)
A 		1
(-3)
A 		6
(3)
A 		3.1
(-0.5)
A 		5
B 1
(-3)
A 		2.3
(-1.9)
A 		4
(-0.5)
A 		3.5
(-0.9)
A 		8.1
(3)
A 		1.2
(-2.8)
A 		7
C 2.2
(-3)
A 		3.6
(-0.1)
A 		5
(2.8)
A 		3.7
(0.1)
A 		5.1
(3)
A 		2.9
(-1.6)
A 		3
avr 1.6
(-3) 		3.2
(-1) 		4.1
(0.1) 		2.7
(-1.6) 		6.4
(3) 		2.4
(-2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176288_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19051
Sequence Type Exemplar sequence
Representative Public ID Y22D7AR.J NCBI
Target Description Y22D7AR.J /REP_DB=WormBase Gene ID /WP=CE23431 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065040(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065040 NCBI Caenorhabditis elegans Y22D7AR.4 (Y22D7AR.4) mRNA, complete cds. 11/11 None
GENEFINDER00000025844 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1665422:1668608:-1 9/11 None
Y22D7AR.4 ENSEMBL cdna:known chromosome:CEL140:III:1665902:1667300:-1 gene:Y22D7AR.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1665901-1667300(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AR.4
Entrez Gene 189512 Entrez gene
WormBase CE39042 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29871 Hypothetical protein Y22D7AR.4 [Caenorhabditis elegans] ref|NP_497441.1| Y22D7AR.4 [Caenorhabditis elegans] 1.0E-93
blast AAK29871 Hypothetical protein Y22D7AR.4 [Caenorhabditis elegans] ref|NP_497441.1| Y22D7AR.4 [Caenorhabditis elegans] 4.0E-81
blast CAE66460 Hypothetical protein CBG11737 [Caenorhabditis briggsae] 3.0E-53
blast CAE66460 Hypothetical protein CBG11737 [Caenorhabditis briggsae] 1.0E-52
blast AAK29872 Hypothetical protein Y22D7AR.3 [Caenorhabditis elegans] ref|NP_497440.1| Y22D7AR.3 [Caenorhabditis elegans] 5.0E-28
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 1.79999995231628
Pfam IPR000971 EMBL-EBI Globin 8.5E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000025844 2 274-296,339-361
Sequence
Target Sequence 
>C. ELEGANS:176288_AT
cagctgggttttaggtaggccgccggggggggagggcgctcattattggtcggttttcaa
ggaatgtgtgttgtttcattttcggaaagcaatgaaatcacataataaatttcacaggtt
ccacaagcgaaatgaaatgtcgtttgccgaaatcgattcggccattattctgtggcggga
ggtgctccgcttcatcattgatcgcatgaaggtcggatattccgagtcgggagctattag
aaaatccaataaacaggcaataaacggccagcactcgatatccggcgatgactcgggcct
aagctcgggcttaagcgtcgaaacgaaacaggaccttactcaggtgaaaatttctgcatt
ttctggcagacaacatcgcacggcttccacccgtcacagcttggcctacataactgccac
accggcagagccgatgacgtcatcgacctgtaactttctgaaaacgctggcctcaatgtc
gcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCTGGGTTTTAGGTAGGCCGCCG 699 195 21 Antisense
GGGCGCTCATTATTGGTCGGTTTTC 477 491 54 Antisense
GAAATCGATTCGGCCATTATTCTGT 605 361 169 Antisense
ATAAACGGCCAGCACTCGATATCCG 358 25 280 Antisense
TCGATATCCGGCGATGACTCGGGCC 593 603 295 Antisense
GGGCCTAAGCTCGGGCTTAAGCGTC 641 469 315 Antisense
TTTCTGGCAGACAACATCGCACGGC 330 669 380 Antisense
GCTTGGCCTACATAACTGCCACACC 30 307 419 Antisense
GCCACACCGGCAGAGCCGATGACGT 480 277 436 Antisense
ACGTCATCGACCTGTAACTTTCTGA 671 91 457 Antisense
TGAAAACGCTGGCCTCAATGTCGCC 366 573 479 Antisense
Sequence Source Affymetrix Proprietary Database