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[176286_at]

Description Y69A2AR.W /REP_DB=WormBase Gene ID /WP=CE22796 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 73      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 54.4
(1.5)
A 		55.5
(3)
A 		55
(2.3)
A 		51
(-3)
A 		5
B 25.8
(-3)
A 		52.4
(-0.3)
A 		42.9
(-1.3)
A 		85.9
(3)
A 		60
C 46.5
(-1.6)
A 		41.1
(-2.1)
A 		31.5
(-3)
A 		96.1
(3)
A 		65
avr 42.2
(-3) 		49.7
(-1.7) 		43.1
(-2.8) 		77.7
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 6.3
(-3)
A 		17
(-2.2)
A 		45.6
(0.1)
A 		27.4
(-1.3)
A 		81.9
(3)
A 		34.2
(-0.8)
A 		76
B 33.2
(-0.3)
A 		8.2
(-3)
A 		63.4
(3)
A 		53.1
(1.9)
A 		34.3
(-0.2)
A 		26.1
(-1.1)
A 		55
C 25.8
(-0.2)
A 		45.8
(3)
A 		12.6
(-2.3)
A 		25.8
(-0.2)
A 		7.9
(-3)
A 		34.1
(1.1)
A 		38
avr 21.8
(-3) 		23.7
(-2.4) 		40.5
(2.7) 		35.4
(1.2) 		41.4
(3) 		31.5
(-0) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 19.8
(3)
A 		12
(-0.8)
A 		14.4
(0.4)
A 		7.5
(-3)
A 		12
B 8.2
(-3)
A 		12.9
(-0.2)
A 		9.9
(-2)
A 		18.3
(3)
A 		10
C 15.4
(2.1)
A 		11.8
(-2.1)
A 		11
(-3)
A 		16.2
(3)
A 		5
avr 14.5
(3) 		12.2
(-2.1) 		11.8
(-3) 		14
(1.9) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 1.2
(-3)
A 		6
(-1.8)
A 		9.9
(-0.8)
A 		7
(-1.5)
A 		24.7
(3)
A 		8.3
(-1.2)
A 		24
B 11.5
(1.2)
A 		2.7
(-3)
A 		15.4
(3)
A 		14.1
(2.4)
A 		13.9
(2.3)
A 		9.7
(0.3)
A 		13
C 9.6
(0.7)
A 		14
(3)
A 		3.2
(-2.7)
A 		5.2
(-1.6)
A 		2.6
(-3)
A 		11.4
(1.6)
A 		11
avr 7.4
(-3) 		7.6
(-2.8) 		9.5
(-1) 		8.8
(-1.7) 		13.7
(3) 		9.8
(-0.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176286_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19341
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.W NCBI
Target Description Y69A2AR.W /REP_DB=WormBase Gene ID /WP=CE22796 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067823(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067823 NCBI Caenorhabditis elegans Y69A2AR.12 (Y69A2AR.12) mRNA, complete cds. 11/11 None
SNAP00000018810 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2570526:2572028:1 11/11 None
Y69A2AR.12 ENSEMBL cdna:known chromosome:CEL140:IV:2570987:2572028:1 gene:Y69A2AR.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000018838 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2570992-2572034(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y69A2AR.12
Entrez Gene 190538 Entrez gene
SwissProt Q95XH9 EMBL-EBI
WormBase CE22796 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68556 Hypothetical protein Y69A2AR.12 [Caenorhabditis elegans] ref|NP_500224.1| Y69A2AR.12 [Caenorhabditis elegans] 1.0E-80
blast AAK68556 Hypothetical protein Y69A2AR.12 [Caenorhabditis elegans] ref|NP_500224.1| Y69A2AR.12 [Caenorhabditis elegans] 1.0E-66
blast AAK68558 Hypothetical protein Y69A2AR.14 [Caenorhabditis elegans] ref|NP_500220.1| Y69A2AR.14 [Caenorhabditis elegans] 2.0E-56
blast AAF59585 Hypothetical protein Y54G2A.13 [Caenorhabditis elegans] ref|NP_500256.2| Y54G2A.13 [Caenorhabditis elegans] 7.0E-52
blast AAF59585 Hypothetical protein Y54G2A.13 [Caenorhabditis elegans] ref|NP_500256.2| Y54G2A.13 [Caenorhabditis elegans] 2.0E-51
blast AAK68558 Hypothetical protein Y69A2AR.14 [Caenorhabditis elegans] ref|NP_500220.1| Y69A2AR.14 [Caenorhabditis elegans] 2.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000018810 1 108-130
Sequence
Target Sequence 
>C. ELEGANS:176286_AT
gaagcgcgaccagaggttggcaattcgaatcaactcagaacaactgcagcatctaggaag
gattttgagcagacgtccacgtcagctccagcaacgtcaacatcatcaacagcaggaatc
attggaggagttgctgctttggtggtggtatgtgctcttgcagtgctcttcttcttctgc
tggagaaatccatccatctgaaaagagtgaaaagggcggggcaacatctgcacctccaaa
gaacacagaaatgagggagaagcttctggagactcaagccaaccttcagaagatccgggc
ccacatgaagaagaacgctctacggcacaaatcggacactagaacatcgaagttcaaaaa
gatgggagcaatcttcattctcatggagcctgatattctcacgccgccggtacttcccaa
cgttgccctcgacaaagtgttttatgatccgacatacaacgagatgtacgatattggaac
cgatgttgatgacatcgagctggatgcgtcctttatggtggatccaagcacaatcacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCGCGACCAGAGGTTGGCAATT 131 345 15 Antisense
TTGAGCAGACGTCCACGTCAGCTCC 12 707 79 Antisense
CTCCAGCAACGTCAACATCATCAAC 6 237 100 Antisense
GAATCATTGGAGGAGTTGCTGCTTT 36 329 130 Antisense
TCTGCTGGAGAAATCCATCCATCTG 290 609 190 Antisense
AAAAGGGCGGGGCAACATCTGCACC 136 65 224 Antisense
ACATCTGCACCTCCAAAGAACACAG 9 107 238 Antisense
GATGGGAGCAATCTTCATTCTCATG 261 409 375 Antisense
CGTTGCCCTCGACAAAGTGTTTTAT 35 185 435 Antisense
CGAGCTGGATGCGTCCTTTATGGTG 494 249 510 Antisense
ATGGTGGATCCAAGCACAATCACGG 297 51 529 Antisense
Sequence Source Affymetrix Proprietary Database