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[176283_at]

Description Y71H2AM.U /REP_DB=WormBase Gene ID /WP=CE26272 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 38      4grp_total > 15      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 68.9
(-1)
P 		86.7
(3)
A 		85.8
(2.8)
P 		60.1
(-3)
A 		27
B 106.1
(3)
P 		42.8
(-3)
A 		74.5
(0)
P 		52.6
(-2.1)
P 		63
C 100.7
(0.6)
P 		43.1
(-3)
A 		54.9
(-2.3)
A 		138.4
(3)
P 		95
avr 91.9
(3) 		57.5
(-3) 		71.7
(-0.5) 		83.7
(1.6) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 90.6
(3)
P 		46.9
(-0.3)
M 		50.3
(-0.1)
A 		12.3
(-3)
A 		27.1
(-1.9)
A 		65.8
(1.1)
A 		78
B 39.5
(-2)
A 		41.5
(-1.5)
P 		38.9
(-2.1)
A 		35
(-3)
A 		60.8
(3)
P 		57.7
(2.3)
P 		26
C 47
(-1.4)
P 		80.2
(3)
P 		34.9
(-3)
A 		55.2
(-0.3)
A 		40.8
(-2.2)
P 		62
(0.6)
P 		45
avr 59
(2.4) 		56.2
(1.8) 		41.4
(-1.4) 		34.2
(-3) 		42.9
(-1.1) 		61.8
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 25.1
(3)
P 		18.8
(0.7)
A 		22.4
(2)
P 		8.8
(-3)
A 		16
B 33.8
(3)
P 		10.6
(-3)
A 		17.3
(-1.3)
P 		11.2
(-2.8)
P 		23
C 33.3
(3)
P 		12.4
(-3)
A 		19.1
(-1.1)
A 		23.3
(0.1)
P 		21
avr 30.7
(3) 		13.9
(-3) 		19.6
(-1) 		14.4
(-2.8) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 16.7
(3)
P 		16.7
(3)
M 		11
(0.5)
A 		3.1
(-3)
A 		8.2
(-0.8)
A 		16
(2.7)
A 		14
B 13.8
(-1.2)
A 		13.8
(-1.2)
P 		9.4
(-3)
A 		9.3
(-3)
A 		24.7
(3)
P 		21.5
(1.8)
P 		15
C 17.4
(0.3)
P 		24.5
(3)
P 		8.9
(-3)
A 		11.1
(-2.2)
A 		13.2
(-1.3)
P 		20.8
(1.6)
P 		16
avr 16
(1.2) 		18.3
(2.4) 		9.8
(-2) 		7.8
(-3) 		15.4
(0.9) 		19.4
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176283_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18930
Sequence Type Exemplar sequence
Representative Public ID Y71H2AM.U NCBI
Target Description Y71H2AM.U /REP_DB=WormBase Gene ID /WP=CE26272 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065221(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065221 NCBI Caenorhabditis elegans Y71H2AM.3 (Y71H2AM.3) mRNA, complete cds. 11/11 None
SNAP00000014455 ENSEMBL cdna:SNAP chromosome:CEL140:III:2805421:2818743:1 11/11 None
GENEFINDER00000014484 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2805421:2811869:1 10/11 None
Y71H2AM.3 ENSEMBL cdna:known chromosome:CEL140:III:2802455:2810992:1 gene:Y71H2AM.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2802454-2810992(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71H2AM.3
Entrez Gene 190606 Entrez gene
SwissProt Q9BL30 EMBL-EBI
WormBase CE26272 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29976 Hypothetical protein Y71H2AM.3 [Caenorhabditis elegans] ref|NP_497622.1| Y71H2AM.3 [Caenorhabditis elegans] 0.0
blast CAE57524 Hypothetical protein CBG00499 [Caenorhabditis briggsae] 0.0
blast AAK29985 Hypothetical protein Y71H2AR.2 [Caenorhabditis elegans] ref|NP_497627.1| Y71H2AR.2 [Caenorhabditis elegans] 1.0E-103
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497622.1 1 38-60
Y71H2AM.3 1 38-60
GENEFINDER00000014484 3 375-394,530-552,557-576
Sequence
Target Sequence 
>C. ELEGANS:176283_AT
aatcatccggatatctattgctttaatcaaattgcaaccacaatgactgctggtcaaaaa
aagattcaatttgtcgataaactcaatatgtcacaattatcgatttatatggctcaattg
atattaaatggatgtgaaacacaatcatcaatgaaattagttataagaacattggataaa
gtaccatatatgcttgtatggttacttgattcatatgttgttattgctaatggtacactt
gaaggactccgctcggaagaggccgaaggatcagtactcgtaccattcccagcaattaaa
ctattatataaagtattcaataatcaaacagcttcaaatgatccacgtgcaaatggagaa
gatacttctgttggattaattgatctaccacttccatgttgtgaaatgctcattgagctt
ctgctcaggagctcacttcggagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCATCCGGATATCTATTGCTTTA 70 171 1654 Antisense
TTGCAACCACAATGACTGCTGGTCA 295 703 1685 Antisense
ATGGTACACTTGAAGGACTCCGCTC 528 49 1883 Antisense
GACTCCGCTCGGAAGAGGCCGAAGG 371 373 1898 Antisense
GGCCGAAGGATCAGTACTCGTACCA 492 483 1914 Antisense
CTCGTACCATTCCCAGCAATTAAAC 631 231 1930 Antisense
AACAGCTTCAAATGATCCACGTGCA 48 137 1980 Antisense
GATTAATTGATCTACCACTTCCATG 55 431 2027 Antisense
ACCACTTCCATGTTGTGAAATGCTC 507 85 2040 Antisense
AATGCTCATTGAGCTTCTGCTCAGG 109 167 2058 Antisense
CTGCTCAGGAGCTCACTTCGGAGCC 35 239 2074 Antisense
Sequence Source Affymetrix Proprietary Database