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[176282_at]

Description Y69A2AR.O /REP_DB=WormBase Gene ID /WP=CE22800 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 10      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 3.5
(-3)
A 		5
(-1.1)
A 		4.3
(-2)
A 		8.2
(3)
A 		5
B 3.5
(-1.4)
A 		7.3
(3)
A 		2.1
(-3)
A 		2.2
(-2.9)
A 		5
C 3.6
(-3)
A 		9
(-1.7)
A 		3.5
(-3)
A 		28.5
(3)
A 		25
avr 3.5
(-2.9) 		7.1
(-0.6) 		3.3
(-3) 		13
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 3.2
(-1)
A 		2.1
(-3)
A 		2.3
(-2.6)
A 		5.4
(3)
A 		5.4
(3)
A 		2.3
(-2.6)
A 		3
B 1.8
(-2.5)
A 		5.3
(3)
A 		3.1
(-0.5)
A 		1.5
(-3)
A 		3.2
(-0.3)
A 		4.4
(1.6)
A 		4
C 2.3
(-3)
A 		5.1
(1.7)
A 		5.9
(3)
A 		4.1
(-0)
A 		3
(-1.8)
A 		2.8
(-2.2)
A 		4
avr 2.4
(-3) 		4.2
(3) 		3.8
(1.7) 		3.7
(1.3) 		3.9
(2) 		3.2
(-0.3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.3
(3)
A 		1.1
(-3)
A 		1.1
(-3)
A 		1.2
(-0)
A 		0
B 1.1
(-0.2)
A 		1.8
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1
C 1.2
(-3)
A 		2.6
(-0.7)
A 		1.2
(-3)
A 		4.8
(3)
A 		4
avr 1.2
(-1.6) 		1.8
(1.2) 		0.9
(-3) 		2.2
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.6
(-2.5)
A 		0.7
(-1.9)
A 		0.5
(-3)
A 		1.4
(1.9)
A 		1.6
(3)
A 		0.6
(-2.5)
A 		1
B 0.6
(-2.1)
A 		1.8
(3)
A 		0.8
(-1.3)
A 		0.4
(-3)
A 		1.3
(0.9)
A 		1.6
(2.1)
A 		1
C 0.8
(-3)
A 		1.6
(3)
A 		1.5
(2.3)
A 		0.8
(-3)
A 		1
(-1.5)
A 		0.9
(-2.3)
A 		1
avr 0.7
(-3) 		1.4
(3) 		0.9
(-1.3) 		0.9
(-1.3) 		1.3
(2.1) 		1
(-0.4) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176282_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19332
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.O NCBI
Target Description Y69A2AR.O /REP_DB=WormBase Gene ID /WP=CE22800 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y69A2AR.O
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y69A2AR.O Y69A2AR.O /REP_DB=WormBase Gene ID /WP=CE22800 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067810 11/11 Negative Strand Matching Probes A 
SNAP00000018802 11/11 Negative Strand Matching Probes None
GENEFINDER00000018855 11/11 Negative Strand Matching Probes None
Y69A2AR.19 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2491728-2492031(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176282_AT
cattgagtttcgatcgctttcctatcttccggacttttgacagctttgatgtaaccatca
atctcaggtccaaaacctttcagttccttgatggcagattccaactcgatcaattcactt
gcatcttgaagagagctcacagattgtccaacagaatccgagttcttcttcgcatctgcc
atgccgttgagatccgtggagactccctttgcttccttcttcatggtttccggaatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTGAGTTTCGATCGCTTTCCTAT 88 217 26 Antisense
TATCTTCCGGACTTTTGACAGCTTT 486 659 48 Antisense
GATGTAACCATCAATCTCAGGTCCA 431 409 73 Antisense
GTCCAAAACCTTTCAGTTCCTTGAT 442 471 93 Antisense
GTTCCTTGATGGCAGATTCCAACTC 414 441 108 Antisense
AACTCGATCAATTCACTTGCATCTT 502 141 128 Antisense
GAGAGCTCACAGATTGTCCAACAGA 190 395 156 Antisense
GTCCAACAGAATCCGAGTTCTTCTT 629 477 171 Antisense
TGCCATGCCGTTGAGATCCGTGGAG 483 585 202 Antisense
TGAGATCCGTGGAGACTCCCTTTGC 671 563 213 Antisense
TCCTTCTTCATGGTTTCCGGAATCG 622 589 239 Antisense
Sequence Source Affymetrix Proprietary Database