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[176280_at]

Description Y69A2AR.M /REP_DB=WormBase Gene ID /WP=CE22799 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 11      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 32      6grp_total > 23      4grp_total > 53      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 440
1 2 3 4 range
A 1012.2
(3)
P 		848
(0.8)
P 		849.3
(0.8)
P 		572.6
(-3)
P 		440
B 938.9
(3)
P 		867.2
(1.5)
P 		846.3
(1.1)
P 		647.5
(-3)
P 		291
C 997.9
(2.8)
P 		1009.2
(3)
P 		796.2
(0)
P 		577.4
(-3)
P 		432
avr 983
(3) 		908.1
(1.8) 		830.6
(0.6) 		599.2
(-3) 		384

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1110
1 2 3 4 5 6 range
A 1262.3
(1.3)
P 		1423.2
(2.5)
P 		1108
(0.1)
P 		1484.1
(3)
P 		694.4
(-3)
P 		741.4
(-2.6)
P 		790
B 1201.4
(1.7)
P 		1348.9
(3)
P 		1305.6
(2.6)
P 		1023.1
(0.2)
P 		704.5
(-2.6)
P 		659.6
(-3)
P 		689
C 1769.5
(3)
P 		1183.5
(-0.5)
P 		1501.2
(1.4)
P 		1219.1
(-0.3)
P 		836.5
(-2.6)
P 		771.8
(-3)
P 		998
avr 1411.1
(3) 		1318.5
(2.2) 		1304.9
(2.1) 		1242.1
(1.5) 		745.1
(-2.8) 		724.3
(-3) 		687
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 368.5
(3)
P 		184.1
(-0.9)
P 		222
(-0.1)
P 		83.8
(-3)
P 		285
B 299.4
(3)
P 		214.2
(-0.2)
P 		196.1
(-0.8)
P 		138
(-3)
P 		161
C 330.3
(3)
P 		290.1
(2)
P 		277.5
(1.6)
P 		97.4
(-3)
P 		233
avr 332.7
(3) 		229.5
(0.3) 		231.9
(0.3) 		106.4
(-3) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 475
1 2 3 4 5 6 range
A 232.7
(-2)
P 		506.2
(3)
P 		241.3
(-1.9)
P 		376.4
(0.6)
P 		209.5
(-2.5)
P 		180.5
(-3)
P 		326
B 418
(2.1)
P 		449
(3)
P 		317.1
(-0.9)
P 		271
(-2.3)
P 		286.2
(-1.8)
P 		246
(-3)
P 		203
C 655.9
(3)
P 		361.1
(-1.3)
P 		382.1
(-1)
P 		245.2
(-3)
P 		270.7
(-2.6)
P 		258.4
(-2.8)
P 		411
avr 435.5
(2.9) 		438.8
(3) 		313.5
(-0.6) 		297.5
(-1) 		255.5
(-2.2) 		228.3
(-3) 		211
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176280_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19325
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.M NCBI
Target Description Y69A2AR.M /REP_DB=WormBase Gene ID /WP=CE22799 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067816(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067816 NCBI Caenorhabditis elegans Y69A2AR.22 (Y69A2AR.22) mRNA, complete cds. 11/11 None
GENEFINDER00000018839 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2502820:2507884:-1 11/11 None
Y69A2AR.22 ENSEMBL cdna:known chromosome:CEL140:IV:2507591:2507884:-1 gene:Y69A2AR.22 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2507596-2507890(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y69A2AR.22
Entrez Gene 190543 Entrez gene
SwissProt Q95XI6 EMBL-EBI
WormBase CE22799 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE74687 Hypothetical protein CBG22499 [Caenorhabditis briggsae] 7.0E-64
blast AAK68567 Hypothetical protein Y69A2AR.22 [Caenorhabditis elegans] ref|NP_500217.1| Y69A2AR.22 [Caenorhabditis elegans] 8.0E-38
blast AAK68567 Hypothetical protein Y69A2AR.22 [Caenorhabditis elegans] ref|NP_500217.1| Y69A2AR.22 [Caenorhabditis elegans] 2.0E-33
blast CAE74687 Hypothetical protein CBG22499 [Caenorhabditis briggsae] 3.0E-22
Sequence
Target Sequence 
>C. ELEGANS:176280_AT
gcgcccgctacacattaatttggtcgcatttttggcggttttcgtgtcggtgaccgtaga
tgcacagtatccagtcacctatgggtgtgttgcccagattttggcctattcgccgatgaa
taagttgaatacgttcgtcaccaatctcaacaaggacgccactttggctgccaagaagaa
gcgggcaaacagttgggtgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGCCCGCTACACATTAATTTGGTC 618 287 15 Antisense
TAATTTGGTCGCATTTTTGGCGGTT 291 635 30 Antisense
GTGTCGGTGACCGTAGATGCACAGT 266 485 58 Antisense
TAGATGCACAGTATCCAGTCACCTA 515 653 71 Antisense
CAGTCACCTATGGGTGTGTTGCCCA 407 207 86 Antisense
GTGTTGCCCAGATTTTGGCCTATTC 408 485 101 Antisense
GATTTTGGCCTATTCGCCGATGAAT 658 427 111 Antisense
GTTGAATACGTTCGTCACCAATCTC 488 437 138 Antisense
CACCAATCTCAACAAGGACGCCACT 19 203 153 Antisense
GACGCCACTTTGGCTGCCAAGAAGA 494 379 169 Antisense
GAAGCGGGCAAACAGTTGGGTGCCG 539 337 192 Antisense
Sequence Source Affymetrix Proprietary Database