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[176279_at]

Description Y71H2AM.R /REP_DB=WormBase Gene ID /WP=CE22938 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 83      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 73      6grp_total > 74      4grp_total > 51      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 401.5
(0.8)
P 		459.7
(3)
P 		387.2
(0.3)
P 		300.8
(-3)
P 		159
B 408
(-0.9)
P 		550.3
(3)
P 		391.4
(-1.4)
P 		332.2
(-3)
P 		218
C 330.1
(0.5)
P 		384.4
(3)
P 		381.9
(2.9)
P 		255.6
(-3)
P 		129
avr 379.9
(-0) 		464.8
(3) 		386.8
(0.2) 		296.2
(-3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 376
1 2 3 4 5 6 range
A 397.5
(-2.5)
P 		457.9
(-1.5)
P 		372.1
(-3)
P 		704.3
(3)
P 		432.5
(-1.9)
P 		643.9
(1.9)
P 		332
B 400.7
(-1)
P 		339.2
(-2.7)
P 		549.4
(3)
P 		405.5
(-0.9)
P 		537.4
(2.7)
P 		328.8
(-3)
P 		221
C 458.5
(-3)
P 		470.1
(-2.6)
P 		639.5
(3)
P 		477.2
(-2.4)
P 		561.5
(0.4)
P 		546.7
(-0.1)
P 		181
avr 418.9
(-3) 		422.4
(-2.8) 		520.3
(2.5) 		529
(3) 		510.5
(2) 		506.5
(1.8) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 146.2
(3)
P 		99.8
(0.3)
P 		101.2
(0.4)
P 		44
(-3)
P 		102
B 130.1
(2.5)
P 		135.9
(3)
P 		90.7
(-1.2)
P 		70.8
(-3)
P 		65
C 109.3
(1.4)
P 		110.5
(1.5)
P 		133.1
(3)
P 		43.1
(-3)
P 		90
avr 128.5
(3) 		115.4
(2) 		108.3
(1.4) 		52.6
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 73.3
(-3)
P 		162.8
(2.1)
P 		81
(-2.6)
P 		178.6
(3)
P 		130.5
(0.3)
P 		156.8
(1.8)
P 		105
B 139.4
(-1.3)
P 		112.9
(-2.7)
P 		133.4
(-1.6)
P 		107.4
(-3)
P 		218.3
(3)
P 		122.6
(-2.2)
P 		111
C 169.9
(2.1)
P 		143.4
(0.3)
P 		162.8
(1.6)
P 		96
(-3)
P 		181.7
(2.9)
P 		183
(3)
P 		87
avr 127.5
(-2.8) 		139.7
(-1.4) 		125.7
(-3) 		127.3
(-2.8) 		176.8
(3) 		154.1
(0.3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176279_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18947
Sequence Type Exemplar sequence
Representative Public ID Y71H2AM.R NCBI
Target Description Y71H2AM.R /REP_DB=WormBase Gene ID /WP=CE22938 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065215(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065215 NCBI Caenorhabditis elegans Y71H2AM.6 (Y71H2AM.6) mRNA, complete cds. 11/11 None
SNAP00000014448 ENSEMBL cdna:SNAP chromosome:CEL140:III:2781071:2785344:1 11/11 None
GENEFINDER00000014476 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2781071:2782761:1 11/11 None
Y71H2AM.6 ENSEMBL cdna:known chromosome:CEL140:III:2781071:2782761:1 gene:Y71H2AM.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Y71H2AM.20a.1 11/11 Negative Strand Matching Probes None
Y71H2AM.20a.2 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2781070-2782761(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71H2AM.6
Entrez Gene 175394 Entrez gene
SwissProt Q9BL36 EMBL-EBI
WormBase CE22938 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259536_S_AT DNA/panthothenate metabolism flavoprotein family protein at
CANINE:1589533_AT similar to Phosphopantothenate--cysteine ligase (Phosphopantothenoylcysteine synthetase) (PPC synthetase) cfa
CANINE:1586299_AT similar to Phosphopantothenate--cysteine ligase (Phosphopantothenoylcysteine synthetase) (PPC synthetase) cfa
CANINE_2:CFA.5862.1.A1_S_AT similar to Phosphopantothenate--cysteine ligase (Phosphopantothenoylcysteine synthetase) (PPC synthetase) cfa
CANINE_2:CFA.9458.1.A1_AT similar to Phosphopantothenate--cysteine ligase (Phosphopantothenoylcysteine synthetase) (PPC synthetase) cfa
DROSOPHILA_2:1624807_AT dm
DROSOPHILA_2:1624604_A_AT dm
DROSGENOME1:151916_AT dm
HG-U133A:218341_AT phosphopantothenoylcysteine synthetase hs
HG-U133_PLUS_2:218341_AT phosphopantothenoylcysteine synthetase hs
HG-U133A_2:218341_AT phosphopantothenoylcysteine synthetase hs
HU35KSUBA:AA249434_AT phosphopantothenoylcysteine synthetase hs
HU35KSUBB:RC_AA233445_AT phosphopantothenoylcysteine synthetase hs
U133_X3P:G13375918_3P_X_AT phosphopantothenoylcysteine synthetase hs
U133_X3P:G13375918_3P_AT phosphopantothenoylcysteine synthetase hs
HG-U95B:46735_S_AT phosphopantothenoylcysteine synthetase hs
HG-U95C:50188_AT Phosphopantothenoylcysteine synthetase hs
HG-U95D:67407_AT Phosphopantothenoylcysteine synthetase hs
MG-U74BV2:107547_AT phosphopantothenoylcysteine synthetase mm
MOE430A:1417473_A_AT phosphopantothenoylcysteine synthetase mm
MOUSE430A_2:1417473_A_AT phosphopantothenoylcysteine synthetase mm
MOUSE430_2:1417473_A_AT phosphopantothenoylcysteine synthetase mm
MOE430A:1448722_S_AT phosphopantothenoylcysteine synthetase mm
MOUSE430A_2:1448722_S_AT phosphopantothenoylcysteine synthetase mm
MOUSE430_2:1448722_S_AT phosphopantothenoylcysteine synthetase mm
MU19KSUBA:TC21547_AT RIKEN cDNA 6330579B17 gene, mRNA (cDNA clone MGC:27872 IMAGE:3494382) mm
MU19KSUBC:TC42099_AT RIKEN cDNA 6330579B17 gene, mRNA (cDNA clone MGC:27872 IMAGE:3494382) mm
MU19KSUBC:TC42099_G_AT RIKEN cDNA 6330579B17 gene, mRNA (cDNA clone MGC:27872 IMAGE:3494382) mm
RG-U34C:RC_AI231606_AT similar to RIKEN cDNA 6330579B17 gene (predicted) rn
RAE230A:1388756_AT similar to RIKEN cDNA 6330579B17 gene (predicted) rn
RAT230_2:1388756_AT similar to RIKEN cDNA 6330579B17 gene (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK29973 Hypothetical protein Y71H2AM.6 [Caenorhabditis elegans] ref|NP_497616.1| Y71H2AM.6 [Caenorhabditis elegans] 1.0E-153
blast AAK29973 Hypothetical protein Y71H2AM.6 [Caenorhabditis elegans] ref|NP_497616.1| Y71H2AM.6 [Caenorhabditis elegans] 1.0E-152
blast CAE64982 Hypothetical protein CBG09817 [Caenorhabditis briggsae] 1.0E-117
blast XP_395052 PREDICTED: similar to ENSANGP00000013327 [Apis mellifera] 2.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR007085 EMBL-EBI DNA/pantothenate metabolism flavoprotein, C-terminal 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:176279_AT
cgttctccaggcattttccgaatattttcaattcgctgaagctagatggggagaatgttg
tgtgtgatctgccgaatctcgcgcaaattctgcgggacaagttcaagtacgaggagaaaa
ttctgtacattccgttcaagaccttcgatcagtatatgtcacgtctcgagcaaatttgca
ttcatctaaatcctctgggatcccgtgcaatggcttatttggccgctgcggtttcagatt
ttgtcgtcaccgagctgccaactcacaaaatcgccagcaacaccgagctgagcctggagc
tcagcgttgctccgaaagttattcaaaaagttgtcacctgcttcatcccgaatgcgttta
tcgtctcgtttaaactagaaacggacgaaacaaagctgattccaaaggcaaaagctgctc
tctccaagtacggccatcaactcgtcatcgcgaatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTCTCCAGGCATTTTCCGAATAT 92 247 230 Antisense
GAATGTTGTGTGTGATCTGCCGAAT 417 331 282 Antisense
GTACATTCCGTTCAAGACCTTCGAT 476 457 354 Antisense
GATCAGTATATGTCACGTCTCGAGC 385 421 376 Antisense
GATCCCGTGCAATGGCTTATTTGGC 386 413 428 Antisense
CTGCGGTTTCAGATTTTGTCGTCAC 664 235 455 Antisense
CGAGCTGCCAACTCACAAAATCGCC 74 251 480 Antisense
TGAGCCTGGAGCTCAGCGTTGCTCC 15 571 518 Antisense
ATCCCGAATGCGTTTATCGTCTCGT 170 39 574 Antisense
AAAGGCAAAAGCTGCTCTCTCCAAG 138 121 633 Antisense
GCCATCAACTCGTCATCGCGAATAT 206 281 662 Antisense
Sequence Source Affymetrix Proprietary Database