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[176276_s_at]

Description Y69A2AR.V /REP_DB=WormBase Gene ID /WP=CE26569 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 31      4grp_total > 43      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 116.7
(3)
P 		112
(2.5)
A 		79.1
(-1.1)
A 		61
(-3)
P 		56
B 59.7
(-2.6)
A 		150.7
(3)
A 		102.8
(0)
A 		53.7
(-3)
P 		97
C 82
(-2.6)
A 		124.7
(3)
A 		84.2
(-2.3)
P 		78.9
(-3)
A 		46
avr 86.1
(-1) 		129.1
(3) 		88.7
(-0.8) 		64.5
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 101.8
(1.5)
A 		60.1
(-2.1)
P 		55.5
(-2.6)
A 		118.5
(3)
A 		59.1
(-2.2)
A 		50.4
(-3)
A 		68
B 85.3
(0.3)
A 		94.7
(1.2)
A 		115
(3)
A 		84.1
(0.2)
A 		54.9
(-2.5)
P 		48.9
(-3)
A 		66
C 66.6
(-0.6)
A 		110.6
(2.6)
A 		106.7
(2.3)
A 		66.8
(-0.6)
A 		116.8
(3)
P 		32.4
(-3)
A 		84
avr 84.6
(2) 		88.5
(2.5) 		92.4
(3) 		89.8
(2.7) 		76.9
(1.1) 		43.9
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 42.5
(3)
P 		24.3
(-0.3)
A 		20.7
(-0.9)
A 		8.9
(-3)
P 		34
B 19
(-1.2)
A 		37.2
(3)
A 		23.8
(-0.1)
A 		11.4
(-3)
P 		26
C 27.2
(0.7)
A 		35.9
(3)
A 		29.3
(1.2)
P 		13.3
(-3)
A 		23
avr 29.6
(2.2) 		32.5
(3) 		24.6
(0.8) 		11.2
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 18.8
(-0.8)
A 		21.4
(0.1)
P 		12.1
(-3)
A 		30.1
(3)
A 		17.8
(-1.1)
A 		12.3
(-2.9)
A 		18
B 29.7
(2.2)
A 		31.5
(3)
A 		27.9
(1.4)
A 		22.3
(-1.2)
A 		22.3
(-1.2)
P 		18.2
(-3)
A 		13
C 24.7
(0.1)
A 		33.8
(2.1)
A 		27.2
(0.6)
A 		13.4
(-2.4)
A 		37.8
(3)
P 		10.8
(-3)
A 		27
avr 24.4
(1.2) 		28.9
(3) 		22.4
(0.4) 		21.9
(0.2) 		26
(1.8) 		13.8
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176276_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19238
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.V NCBI
Target Description Y69A2AR.V /REP_DB=WormBase Gene ID /WP=CE26569 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067822(11), NM_067821(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067822 NCBI Caenorhabditis elegans Y69A2AR.13 (Y69A2AR.13) mRNA, complete cds. 11/11 None
NM_067821 NCBI Caenorhabditis elegans Y69A2AR.25 (Y69A2AR.25) mRNA, complete cds. 11/11 A 
GENEFINDER00000018831 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2565838:2568364:-1 11/11 None
GENEFINDER00000018838 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2568611:2572745:1 11/11 None
Y69A2AR.25 ENSEMBL cdna:known chromosome:CEL140:IV:2565838:2568364:-1 gene:Y69A2AR.25 11/11 A 
Y69A2AR.13 ENSEMBL cdna:known chromosome:CEL140:IV:2569372:2570695:1 gene:Y69A2AR.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018809 1/11 Cross Hyb Matching Probes None
SNAP00000018810 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2568616-2570701(+) 100.0 100.0
chrIV:2566240-2568312(-) 98.35 98.35
Public Domain and Genome References
Gene Title

Ensembl Y69A2AR.25
Y69A2AR.13
Entrez Gene 190539 Entrez gene
190546 Entrez gene
SwissProt Q95XI0 EMBL-EBI
Q95XI1 EMBL-EBI
WormBase CE30463 Wormbase
CE22793 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68570 Hypothetical protein Y69A2AR.25 [Caenorhabditis elegans] ref|NP_500222.1| Y69A2AR.25 [Caenorhabditis elegans] 0.0
blast AAK68570 Hypothetical protein Y69A2AR.25 [Caenorhabditis elegans] ref|NP_500222.1| Y69A2AR.25 [Caenorhabditis elegans] 1.0E-161
blast AAK68557 Hypothetical protein Y69A2AR.13 [Caenorhabditis elegans] ref|NP_500223.2| Y69A2AR.13 [Caenorhabditis elegans] 1.0E-131
blast AAK68570 Hypothetical protein Y69A2AR.25 [Caenorhabditis elegans] ref|NP_500222.1| Y69A2AR.25 [Caenorhabditis elegans] 1.0E-129
blast AAK68557 Hypothetical protein Y69A2AR.13 [Caenorhabditis elegans] ref|NP_500223.2| Y69A2AR.13 [Caenorhabditis elegans] 1.0E-129
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000018838 1 330-352
Sequence
Target Sequence 
>C. ELEGANS:176276_S_AT
ccgcgttgcccagggagtgaaccaggtgataattgtctcaaaatcactgataaggactgt
catttcccactcaaacaggaggaaattaatcaaaagtgtcaggattttaagcaagatcac
aggtgtccgggaacgatctggtactgtactatcgcaccaaagcatgccgataggaacttg
tgcaataatgtcaatacaacacatgatccagaagtgtgttatgcagcaggtgatcctgcg
tgtgtaaaacctatcccaccgacagcatcatatggcacggatttctgcaaaaagtatacc
aatgattgccaatgttactcaatgcgtcttggattcttgcctatttatccaaaccgcgca
ctctgcaagttgcatcacgctgaaataaagaaatggatttgggcatgcgttgtaaaaagt
ggggatattggtgcagggtgttacaaagacaccgaccatgattgcaatcacaatacgaca
atgactgaggcagaagcaaaatacctgtgcattgatgaatttgagtttagagacttgaga
tgtcctagactctctggtgaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCGTTGCCCAGGGAGTGAACCAG 531 259 199 Antisense
GATAAGGACTGTCATTTCCCACTCA 484 421 247 Antisense
AGGTGTCCGGGAACGATCTGGTACT 665 55 319 Antisense
GTACTATCGCACCAAAGCATGCCGA 450 459 344 Antisense
TCCTGCGTGTGTAAAACCTATCCCA 591 593 432 Antisense
CTATCCCACCGACAGCATCATATGG 327 225 449 Antisense
ATGCGTCTTGGATTCTTGCCTATTT 692 41 520 Antisense
TTGCCTATTTATCCAAACCGCGCAC 323 701 535 Antisense
GCGCACTCTGCAAGTTGCATCACGC 374 287 554 Antisense
AAGACACCGACCATGATTGCAATCA 385 153 644 Antisense
GATGTCCTAGACTCTCTGGTGAAGG 422 409 737 Antisense
Sequence Source Affymetrix Proprietary Database