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[176273_at]

Description Y71H2AM.Q /REP_DB=WormBase Gene ID /WP=CE26271 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 62      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 7.7
(-3)
A 		14.2
(-2.5)
A 		86.5
(3)
A 		11.4
(-2.7)
A 		79
B 8.3
(-2.6)
A 		45.7
(2.5)
A 		49.4
(3)
A 		5
(-3)
A 		44
C 50.8
(3)
A 		36.7
(0.9)
A 		42.3
(1.7)
A 		11
(-3)
A 		40
avr 22.3
(-1.4) 		32.2
(-0.2) 		59.4
(3) 		9.1
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 11.5
(-3)
A 		35
(0.4)
A 		53.1
(3)
A 		39.3
(1)
A 		18.3
(-2)
A 		14
(-2.6)
A 		42
B 31.5
(-0)
A 		7.4
(-3)
A 		12.4
(-2.4)
A 		55.8
(3)
A 		36.9
(0.7)
A 		15.3
(-2)
A 		48
C 4
(-3)
A 		44.9
(1.1)
A 		64
(3)
A 		14.6
(-1.9)
A 		27.1
(-0.7)
A 		24
(-1)
A 		60
avr 15.7
(-3) 		29.1
(-0.1) 		43.2
(3) 		36.6
(1.6) 		27.4
(-0.4) 		17.8
(-2.5) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 2.8
(-2.7)
A 		3.1
(-2.6)
A 		22.6
(3)
A 		1.7
(-3)
A 		21
B 2.6
(-2.1)
A 		11.3
(2.9)
A 		11.4
(3)
A 		1.1
(-3)
A 		10
C 16.8
(3)
A 		10.5
(0.5)
A 		14.7
(2.2)
A 		1.8
(-3)
A 		15
avr 7.4
(-0.6) 		8.3
(-0.2) 		16.2
(3) 		1.5
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.1
(-3)
A 		12.5
(3)
A 		11.6
(2.5)
A 		10
(1.6)
A 		5.5
(-1)
A 		3.4
(-2.3)
A 		10
B 11
(1.1)
A 		2.5
(-3)
A 		3
(-2.8)
A 		14.8
(2.9)
A 		15
(3)
A 		5.7
(-1.5)
A 		13
C 1.5
(-3)
A 		13.7
(1.9)
A 		16.3
(3)
A 		2.9
(-2.4)
A 		8.8
(-0)
A 		8
(-0.4)
A 		15
avr 4.9
(-3) 		9.6
(2.2) 		10.3
(3) 		9.2
(1.8) 		9.8
(2.4) 		5.7
(-2.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176273_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18966
Sequence Type Exemplar sequence
Representative Public ID Y71H2AM.Q NCBI
Target Description Y71H2AM.Q /REP_DB=WormBase Gene ID /WP=CE26271 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y71H2AM.Q
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y71H2AM.Q Y71H2AM.Q /REP_DB=WormBase Gene ID /WP=CE26271 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2770827-2771846(+) 31.88 86.89
Sequence
Target Sequence 
>C. ELEGANS:176273_AT
tgggcgagtcatttaactccaccaatcctgttgaggctgagcacgttgctgttgttgctg
ttggcgacctccaccaccgcctgactggaatccaccgcctccaccggaacgttgtccacc
gcctccgaagccaccgccgcctccgttgccgcctccgccgtttccacttccaccttgata
acggtgatcgcgacctggaatttgatgttttaagaaacatcgataaaaaattcgggtcga
acgaaagtttgaaactaccgtactctttaaaggcgcaagccttcttgtatgtaataaaaa
tttgtcgtgtcgagaccctgggtacagtaatttcacatgcgcctttaatgtcgaaagttt
gtaaaattacggtacccagggtctcgacacgacaaatttttgctccatccaaaacgtact
ctttaaaggcgcatacatttttatattcagcaaaaatttttcgtgtcgagaccccagata
cgcgattttttgaaattttttctggcaagcgcaccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGCGAGTCATTTAACTCCACCAA 61 555 14 Antisense
ACTCCACCAATCCTGTTGAGGCTGA 628 97 29 Antisense
GCACGTTGCTGTTGTTGCTGTTGGC 568 315 54 Antisense
TTTCCACTTCCACCTTGATAACGGT 447 669 174 Antisense
GATAACGGTGATCGCGACCTGGAAT 636 421 190 Antisense
AAGGCGCAAGCCTTCTTGTATGTAA 600 161 283 Antisense
GGTACAGTAATTTCACATGCGCCTT 593 503 334 Antisense
ACACGACAAATTTTTGCTCCATCCA 605 109 400 Antisense
GCTCCATCCAAAACGTACTCTTTAA 150 299 415 Antisense
CGAGACCCCAGATACGCGATTTTTT 106 251 480 Antisense
AAATTTTTTCTGGCAAGCGCACCGA 304 115 506 Antisense
Sequence Source Affymetrix Proprietary Database