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[176271_at]

Description C52D10.1 /REP_DB=WormBase Gene ID /WP=CE17586 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 72      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_highest_nonorm > 53      6grp_total > 72      4grp_total > 41      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 558
1 2 3 4 range
A 183.7
(-3)
P 		569.7
(1.4)
P 		708.5
(3)
P 		547.2
(1.2)
P 		525
B 176.4
(-3)
P 		674.7
(3)
P 		639.1
(2.6)
P 		498.8
(0.9)
P 		498
C 163.7
(-3)
P 		722
(3)
P 		673.1
(2.5)
P 		546.4
(1.1)
P 		558
avr 174.6
(-3) 		655.5
(2.8) 		673.6
(3) 		530.8
(1.3) 		499

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 757
1 2 3 4 5 6 range
A 411.8
(-3)
P 		523.1
(-2)
P 		1100.8
(3)
P 		913.8
(1.4)
P 		885.7
(1.1)
P 		440.9
(-2.7)
P 		689
B 391.2
(-3)
P 		570.3
(-1.5)
P 		902.3
(1.3)
P 		1108.6
(3)
P 		927.2
(1.5)
P 		467.5
(-2.4)
P 		717
C 351.2
(-3)
P 		443.4
(-2.2)
P 		899.2
(1.9)
P 		761.9
(0.7)
P 		1021.5
(3)
P 		434.5
(-2.3)
P 		670
avr 384.7
(-3) 		512.3
(-1.7) 		967.4
(3) 		928.1
(2.6) 		944.8
(2.8) 		447.6
(-2.4) 		583
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 66.9
(-3)
P 		123.7
(-0.1)
P 		185.2
(3)
P 		80.1
(-2.3)
P 		118
B 56.3
(-3)
P 		166.6
(3)
P 		148.1
(2)
P 		106.3
(-0.3)
P 		110
C 54.2
(-3)
P 		207.6
(2.1)
P 		234.6
(3)
P 		92.1
(-1.7)
P 		180
avr 59.1
(-3) 		166
(1.9) 		189.3
(3) 		92.8
(-1.4) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 75.9
(-3)
P 		186
(0.5)
P 		239.7
(2.1)
P 		231.8
(1.9)
P 		267.3
(3)
P 		107.4
(-2)
P 		191
B 136.1
(-3)
P 		189.8
(-1.7)
P 		219.1
(-0.9)
P 		293.6
(0.9)
P 		376.7
(3)
P 		174.3
(-2)
P 		241
C 130.2
(-3)
P 		135.3
(-2.8)
P 		228.9
(-0)
P 		153.2
(-2.3)
P 		330.5
(3)
P 		145.5
(-2.5)
P 		200
avr 114.1
(-3) 		170.4
(-1.4) 		229.2
(0.3) 		226.2
(0.2) 		324.8
(3) 		142.4
(-2.2) 		211
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176271_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9339
Sequence Type Exemplar sequence
Representative Public ID C52D10.1 NCBI
Target Description C52D10.1 /REP_DB=WormBase Gene ID /WP=CE17586 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070649(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070649 NCBI Caenorhabditis elegans C52D10.1 (C52D10.1) mRNA, complete cds. 11/11 None
SNAP00000030649 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17186884:17189603:1 11/11 None
GENEFINDER00000030662 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17186884:17189603:1 11/11 None
C52D10.1 ENSEMBL cdna:known chromosome:CEL140:IV:17187967:17189739:1 gene:C52D10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17188544-17189609(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C52D10.1
Entrez Gene 178497 Entrez gene
SwissProt Q966N3 EMBL-EBI
WormBase CE17586 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503049 C52D10.2 [Caenorhabditis elegans] gb|AAK77205.1| Hypothetical protein C52D10.2 [Caenorhabditis elegans] 4.0E-70
blast NP_503050 C52D10.1 [Caenorhabditis elegans] gb|AAK77201.1| Hypothetical protein C52D10.1 [Caenorhabditis elegans] 2.0E-52
blast NP_503050 C52D10.1 [Caenorhabditis elegans] gb|AAK77201.1| Hypothetical protein C52D10.1 [Caenorhabditis elegans] 1.0E-51
blast CAE57402 Hypothetical protein CBG00355 [Caenorhabditis briggsae] 3.0E-48
blast CAE57402 Hypothetical protein CBG00355 [Caenorhabditis briggsae] 3.0E-47
Sequence
Target Sequence 
>C. ELEGANS:176271_AT
gggagtcgatccgtcggtgaaagttgaatacaaagcaccaacagtgacttatgatcaggt
ggggttcatgtcaaaaagtaccttaatgactcacgagcagctgatcagtgtccgcagtgc
aaaagttcgtcaaagtgtaaaaattacggtaaaggagcagattccaaaaagccatgatga
caagattaaggtttctatcgtgtctccggagatcaaaagctcgtcttcctccaagaactc
atctccaccagatgctcgtcttaacaaagaccataatcttgaatggtgtgtcattttggc
acccggccaacatcgtcttctcccagttcgctacacaattgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAGTCGATCCGTCGGTGAAAGTT 163 495 15 Antisense
GCACCAACAGTGACTTATGATCAGG 125 315 49 Antisense
GATCAGGTGGGGTTCATGTCAAAAA 709 419 67 Antisense
AGTACCTTAATGACTCACGAGCAGC 128 63 91 Antisense
CACGAGCAGCTGATCAGTGTCCGCA 41 201 106 Antisense
GTGTCCGCAGTGCAAAAGTTCGTCA 413 487 122 Antisense
TTAAGGTTTCTATCGTGTCTCCGGA 508 679 200 Antisense
CGGAGATCAAAAGCTCGTCTTCCTC 193 243 221 Antisense
TCCACCAGATGCTCGTCTTAACAAA 406 589 258 Antisense
TCATTTTGGCACCCGGCCAACATCG 686 617 305 Antisense
TCTCCCAGTTCGCTACACAATTGAG 13 607 333 Antisense
Sequence Source Affymetrix Proprietary Database