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[176270_at]

Description C30C11.3 /REP_DB=WormBase Gene ID /WP=CE00102 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 73      4grp_highest_8_8 > 11      4grp_high_8_8 > 39      6grp_highest_nonorm > 81      6grp_total > 64      4grp_total > 40      6grp_high1_sub > 03_04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 160.3
(-3)
P 		249.6
(2.3)
P 		262.2
(3)
P 		230
(1.1)
P 		102
B 157
(-3)
P 		189.7
(1.4)
P 		188
(1.2)
P 		201.5
(3)
P 		45
C 220.7
(0.6)
P 		182.6
(-2.8)
P 		248.1
(3)
P 		180.5
(-3)
P 		68
avr 179.3
(-3) 		207.3
(0.1) 		232.8
(3) 		204
(-0.2) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 130.2
(-3)
P 		273.3
(-0)
P 		296
(0.4)
P 		420.2
(3)
P 		203.1
(-1.5)
P 		277.1
(0)
P 		290
B 194.2
(-3)
P 		220.8
(-1)
P 		272.1
(3)
P 		210.1
(-1.8)
P 		241.1
(0.6)
P 		253.6
(1.6)
P 		78
C 243.9
(-3)
P 		268.6
(-1.1)
P 		322.5
(3)
P 		244.6
(-2.9)
P 		285.1
(0.1)
P 		294.7
(0.9)
P 		79
avr 189.4
(-3) 		254.2
(0.6) 		296.9
(3) 		291.6
(2.7) 		243.1
(-0) 		275.1
(1.8) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 58.4
(1.3)
P 		54.2
(0.5)
P 		68.5
(3)
P 		33.7
(-3)
P 		35
B 50.1
(3)
P 		46.9
(0.3)
P 		43.6
(-2.4)
P 		42.9
(-3)
P 		7
C 73.1
(1.6)
P 		52.5
(-0.6)
P 		86.5
(3)
P 		30.4
(-3)
P 		56
avr 60.5
(1.9) 		51.2
(0) 		66.2
(3) 		35.7
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 24
(-3)
P 		97.2
(2.3)
P 		64.5
(-0.1)
P 		106.6
(3)
P 		61.3
(-0.3)
P 		67.5
(0.2)
P 		83
B 67.6
(-1.3)
P 		73.5
(-0.5)
P 		66.1
(-1.5)
P 		55.7
(-3)
P 		98
(3)
P 		94.6
(2.5)
P 		42
C 90.4
(2)
P 		82
(1)
P 		82.1
(1)
P 		49.2
(-3)
P 		92.2
(2.2)
P 		98.6
(3)
P 		49
avr 60.7
(-3) 		84.2
(2.4) 		70.9
(-0.7) 		70.5
(-0.8) 		83.8
(2.3) 		86.9
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176270_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6268
Sequence Type Exemplar sequence
Representative Public ID C30C11.3 NCBI
Target Description C30C11.3 /REP_DB=WormBase Gene ID /WP=CE00102 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066466(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066466 NCBI Caenorhabditis elegans ZK1236.7 (ZK1236.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000009807 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8443050:8443516:-1 11/11 None
SNAP00000009802 ENSEMBL cdna:SNAP chromosome:CEL140:III:8443233:8443516:-1 11/11 None
ZK1236.7.1 ENSEMBL cdna:known chromosome:CEL140:III:8439380:8443518:-1 gene:ZK1236.7 11/11 None
ZK1236.7.3 ENSEMBL cdna:known chromosome:CEL140:III:8439500:8443519:-1 gene:ZK1236.7 11/11 None
ZK1236.7.2 ENSEMBL cdna:known chromosome:CEL140:III:8439500:8443521:-1 gene:ZK1236.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8443181-8443512(-) 88.77 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1236.7
Entrez Gene 176194 Entrez gene
SwissProt P34623 EMBL-EBI
WormBase CE29628 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14948_AT expressed protein at
ATH1-121501:253897_AT expressed protein at
CANINE:1600245_AT similar to Protein C20orf116 homolog precursor cfa
CANINE_2:CFA.8555.1.S1_AT similar to Protein C20orf116 homolog precursor cfa
CANINE_2:CFAAFFX.10576.1.S1_S_AT similar to Protein C20orf116 homolog precursor cfa
DROSOPHILA_2:1629452_AT dm
DROSGENOME1:152746_AT dm
CHICKEN:GGA.7282.1.S1_AT similar to chromosome 20 open reading frame 116 gga
CHICKEN:GGAAFFX.8736.1.S1_AT similar to chromosome 20 open reading frame 116 gga
HU35KSUBA:AA174202_AT chromosome 20 open reading frame 116 hs
HU35KSUBB:RC_W73520_AT chromosome 20 open reading frame 116 hs
HG-U133A:218159_AT chromosome 20 open reading frame 116 hs
HG-U133_PLUS_2:218159_AT chromosome 20 open reading frame 116 hs
HG-U133A_2:218159_AT chromosome 20 open reading frame 116 hs
U133_X3P:G13027601_3P_AT chromosome 20 open reading frame 116 hs
HG-U95B:44134_AT chromosome 20 open reading frame 116 hs
HG-U133_PLUS_2:235640_AT Chromosome 20 open reading frame 116 hs
HG-U133B:235640_AT Chromosome 20 open reading frame 116 hs
HG-U95E:77247_AT Chromosome 20 open reading frame 116 hs
U133_X3P:HS.154366.0.A1_3P_X_AT Chromosome 20 open reading frame 116 hs
U133_X3P:HS.154366.0.A1_3P_AT Chromosome 20 open reading frame 116 hs
MOE430A:1434702_AT RIKEN cDNA 2600009E05 gene mm
MOUSE430A_2:1434702_AT RIKEN cDNA 2600009E05 gene mm
MOUSE430_2:1434702_AT RIKEN cDNA 2600009E05 gene mm
MG-U74AV2:104040_AT RIKEN cDNA 2600009E05 gene mm
MG-U74BV2:109812_F_AT RIKEN cDNA 2600009E05 gene mm
MU19KSUBC:TC40873_AT PREDICTED: hypothetical protein LOC77006 [Mus musculus], mRNA sequence mm
MU19KSUBC:TC40873_G_AT PREDICTED: hypothetical protein LOC77006 [Mus musculus], mRNA sequence mm
RG-U34A:RC_AI638949_S_AT similar to chromosome 20 open reading frame 116 (predicted) rn
RG-U34C:RC_AI073180_AT similar to chromosome 20 open reading frame 116 (predicted) rn
RAE230A:1388626_AT similar to chromosome 20 open reading frame 116 (predicted) rn
RAT230_2:1388626_AT similar to chromosome 20 open reading frame 116 (predicted) rn
RG-U34C:RC_AI102526_AT Similar to chromosome 20 open reading frame 116 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA28188 Hypothetical protein ZK1236.7 [Caenorhabditis elegans] ref|NP_498867.1| ZK1236.7 [Caenorhabditis elegans] sp|P34623|YO87_CAEEL Hypothetical protein ZK1236.7 in chromosome III 1.0E-111
blast CAE71254 Hypothetical protein CBG18134 [Caenorhabditis briggsae] 2.0E-87
blast S44893 ZK1236.7 protein - Caenorhabditis elegans 5.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498867.1 1 26-48
ZK1236.7.1 1 26-48
ZK1236.7.3 1 26-48
ZK1236.7.2 1 26-48
GENEFINDER00000009807 1 26-48
SNAP00000009802 1 26-48
Sequence
Target Sequence 
>C. ELEGANS:176270_AT
gagaagtctacagattccccatacagtttcggtggaacaaaggatgatggaatggatcca
cttcttcttggatcagttggagtactcgttttagcagtgacattaattatttggagactt
ctgaaactacaatgggatgagaaagccgctcgacagaggaccgatatgttgctggcaatg
aatgaaggtgctggaggtagtgatgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAGTCTACAGATTCCCCATACA 16 391 28 Antisense
AGATTCCCCATACAGTTTCGGTGGA 4 59 39 Antisense
TCCACTTCTTCTTGGATCAGTTGGA 363 589 84 Antisense
GATCAGTTGGAGTACTCGTTTTAGC 193 421 98 Antisense
GAGTACTCGTTTTAGCAGTGACATT 549 399 107 Antisense
GACATTAATTATTTGGAGACTTCTG 207 369 126 Antisense
GAGACTTCTGAAACTACAATGGGAT 516 391 141 Antisense
ATGGGATGAGAAAGCCGCTCGACAG 304 51 159 Antisense
AAGCCGCTCGACAGAGGACCGATAT 531 149 170 Antisense
GAGGACCGATATGTTGCTGGCAATG 261 405 183 Antisense
GAAGGTGCTGGAGGTAGTGATGAAC 693 333 211 Antisense
Sequence Source Affymetrix Proprietary Database