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[176269_at]

Description Y69A2AR.F /REP_DB=WormBase Gene ID /WP=CE22806 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 80      4grp_total > 41      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 7.8
(-3)
A 		12.1
(-2.4)
A 		47.6
(3)
A 		35.7
(1.2)
A 		40
B 9.2
(-2.4)
A 		43.9
(3)
A 		5.6
(-3)
A 		6.8
(-2.8)
A 		38
C 2.9
(-3)
A 		11.3
(-0.3)
A 		21.6
(3)
A 		4.8
(-2.4)
A 		19
avr 6.6
(-3) 		22.4
(2.2) 		24.9
(3) 		15.8
(0) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.9
(-1.5)
A 		4.3
(-1.1)
A 		2.1
(-3)
A 		9.1
(3)
A 		4.3
(-1.1)
A 		5
(-0.5)
A 		7
B 2.8
(-3)
A 		4.5
(0)
A 		4.6
(0.2)
A 		6.2
(3)
A 		3.4
(-1.9)
A 		3.1
(-2.5)
A 		3
C 8.1
(0.6)
A 		12.4
(3)
A 		2.1
(-2.7)
A 		10.1
(1.7)
A 		1.6
(-3)
A 		3.1
(-2.2)
A 		11
avr 4.9
(-0.9) 		7.1
(1.5) 		2.9
(-3) 		8.5
(3) 		3.1
(-2.8) 		3.7
(-2.1) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.8
(-2.9)
A 		2.6
(-3)
A 		12.5
(3)
A 		5.2
(-1.4)
A 		10
B 2.9
(-2)
A 		10.8
(3)
A 		1.3
(-3)
A 		1.4
(-2.9)
A 		10
C 1
(-2.8)
A 		3.3
(-0.8)
A 		7.5
(3)
A 		0.8
(-3)
A 		7
avr 2.2
(-3) 		5.6
(1.2) 		7.1
(3) 		2.5
(-2.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.7
(-2.1)
A 		1.5
(0.5)
A 		0.4
(-3)
A 		2.3
(3)
A 		1.3
(-0.2)
A 		1.2
(-0.5)
A 		2
B 1
(-3)
A 		1.5
(1.3)
A 		1.1
(-2.1)
A 		1.7
(3)
A 		1.4
(0.4)
A 		1.2
(-1.3)
A 		1
C 3
(1.5)
A 		3.8
(3)
A 		0.5
(-3)
A 		2
(-0.3)
A 		0.5
(-3)
A 		1
(-2.1)
A 		3
avr 1.6
(0.4) 		2.3
(3) 		0.7
(-3) 		2
(1.9) 		1.1
(-1.5) 		1.1
(-1.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176269_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19201
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.F NCBI
Target Description Y69A2AR.F /REP_DB=WormBase Gene ID /WP=CE22806 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067829(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067829 NCBI Caenorhabditis elegans Y69A2AR.27 (Y69A2AR.27) mRNA, complete cds. 11/11 None
Y69A2AR.27 ENSEMBL cdna:known chromosome:CEL140:IV:2597618:2598102:-1 gene:Y69A2AR.27 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2597623-2598108(-) 75.83 100.0
Public Domain and Genome References
Gene Title
Ensembl Y69A2AR.27
Entrez Gene 190548 Entrez gene
SwissProt Q95XH3 EMBL-EBI
WormBase CE22806 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68572 Hypothetical protein Y69A2AR.27 [Caenorhabditis elegans] ref|NP_500230.1| Y69A2AR.27 [Caenorhabditis elegans] 4.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500230.1 3 29-51,56-78,93-115
Y69A2AR.27 3 29-51,56-78,93-115
Sequence
Target Sequence 
>C. ELEGANS:176269_AT
atgatagtaagtagatcctttgctattttttacaaaagctgtaaacgccgggggaaaata
gagttctattctatcaataatcatctatttatccacgctctcatccttctcgacactctt
ctgcttggatccttccttagtcttctcatcctctcctttcttcggcttttccttcttctc
cttattgtccttgccgtcgttccccttcttgctcttcttgctctttctggggaccttttc
ctcgctcatcctgcctggacccattgcctgggattgatccaatcccacctcagccattta
tttgttctccttacttttcttactctaaaatgcattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATAGTAAGTAGATCCTTTGCTA 547 45 13 Antisense
GTAGATCCTTTGCTATTTTTTACAA 698 455 23 Antisense
GATCCTTTGCTATTTTTTACAAAAG 129 407 26 Antisense
GAGTTCTATTCTATCAATAATCATC 194 399 73 Antisense
ATAATCATCTATTTATCCACGCTCT 454 25 89 Antisense
CCTGGACCCATTGCCTGGGATTGAT 100 267 266 Antisense
ACCCATTGCCTGGGATTGATCCAAT 708 89 271 Antisense
GGGATTGATCCAATCCCACCTCAGC 347 495 282 Antisense
TCAGCCATTTATTTGTTCTCCTTAC 455 625 302 Antisense
TCCTTACTTTTCTTACTCTAAAATG 583 589 320 Antisense
CTTTTCTTACTCTAAAATGCATTTA 93 223 326 Antisense
Sequence Source Affymetrix Proprietary Database