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[176267_at]

Description F42H10.9 /REP_DB=WormBase Gene ID /WP=CE24970 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 3.1
(-3)
A 		4.5
(-2)
A 		11.2
(3)
A 		5.4
(-1.3)
A 		8
B 9.3
(2)
A 		4.7
(-3)
A 		7.1
(-0.4)
A 		10.2
(3)
A 		6
C 20.5
(3)
A 		5.8
(-3)
A 		7
(-2.5)
A 		11.2
(-0.8)
A 		15
avr 11
(3) 		5
(-3) 		8.4
(0.4) 		8.9
(0.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 3.3
(-2.8)
A 		5.3
(2.3)
A 		3.2
(-3)
A 		5.6
(3)
A 		4.6
(0.5)
A 		4
(-1)
A 		2
B 3.8
(-2.7)
A 		5.2
(-2.2)
A 		22
(3)
A 		2.7
(-3)
A 		3.8
(-2.7)
A 		3.2
(-2.8)
A 		19
C 3.3
(-2.8)
A 		3.5
(-2.4)
A 		3.2
(-3)
A 		3.4
(-2.6)
A 		6.1
(3)
A 		3.9
(-1.6)
A 		3
avr 3.5
(-3) 		4.7
(-1.8) 		9.5
(3) 		3.9
(-2.6) 		4.8
(-1.7) 		3.7
(-2.8) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.1
(-2.1)
A 		1
(-2.4)
A 		2.9
(3)
A 		0.8
(-3)
A 		2
B 3
(3)
A 		1.2
(-3)
A 		1.6
(-1.7)
A 		2.2
(0.3)
A 		2
C 6.8
(3)
A 		1.7
(-3)
A 		2.4
(-2.2)
A 		1.9
(-2.8)
A 		5
avr 3.6
(3) 		1.3
(-3) 		2.3
(-0.4) 		1.6
(-2.2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.9
(3)
A 		0.7
(-2.5)
A 		1.4
(0.7)
A 		1.4
(0.7)
A 		1
(-1.2)
A 		1
B 1.3
(-2.2)
A 		1.7
(-1.7)
A 		5.3
(3)
A 		0.7
(-3)
A 		1.5
(-2)
A 		1.2
(-2.3)
A 		5
C 1.2
(-0.7)
A 		1.1
(-1.2)
A 		0.8
(-2.5)
A 		0.7
(-3)
A 		2
(3)
A 		1.3
(-0.2)
A 		1
avr 1
(-2.6) 		1.6
(0) 		2.3
(3) 		0.9
(-3) 		1.6
(0) 		1.2
(-1.7) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176267_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7504
Sequence Type Exemplar sequence
Representative Public ID F42H10.9 NCBI
Target Description F42H10.9 /REP_DB=WormBase Gene ID /WP=CE24970 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027411(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027411 NCBI Caenorhabditis elegans F42H10.9 (F42H10.9) mRNA, complete cds. 11/11 None
F42H10.9 ENSEMBL cdna:known chromosome:CEL140:III:8493786:8497251:1 gene:F42H10.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8493780-8497246(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42H10.9
Entrez Gene 3564821 Entrez gene
SwissProt P34414 EMBL-EBI
WormBase CE24970 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28019 Hypothetical protein F42H10.9 [Caenorhabditis elegans] ref|NP_001022582.1| F42H10.9 [Caenorhabditis elegans] sp|P34414|YLZ9_CAEEL Hypothetical protein F42H10.9 in chromosome III 1.0E-154
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022582.1 1 16-38
F42H10.9 1 16-38
Sequence
Target Sequence 
>C. ELEGANS:176267_AT
tcgacggctccatgtcaaggcggagcgtgcgtcggtgataggaggagacattgtcgacgg
agcattcggcagttgggctcttcgagcagcacgtagtgagcatcaacttaagcagcagag
taacgaagatttagctcagaatgctcgaatctcggcattgctcggtgagatgcgtccaag
aatgtcagcgatgccaccaaatggacatcaacagcaatatcagccacagttgagaagaaa
agcaaatacgacaaatattgtggatgtatcatcacaagttccatcagcacgaaatgcaat
ttacgggtcttggcaagatcgtcatcgtccaacgcgtctgtatggaagtcaacttgtttc
gtcttcttcaactcttcccaaatatgatcaattgtattgcaatacagcgtcaccattaac
tggaaacggatcaaccaatacaattgccacaactggaattcgcagagaaccacctgaata
tgggtatgtattcattctgccttgtgtcgttgtgatccctaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGACGGCTCCATGTCAAGGCGGAG 323 601 369 Antisense
CGGAGCGTGCGTCGGTGATAGGAGG 6 243 389 Antisense
GGAGCATTCGGCAGTTGGGCTCTTC 473 519 427 Antisense
CTCGAATCTCGGCATTGCTCGGTGA 371 233 512 Antisense
GCGTCCAAGAATGTCAGCGATGCCA 553 291 540 Antisense
GTCTTGGCAAGATCGTCATCGTCCA 214 469 675 Antisense
TCATCGTCCAACGCGTCTGTATGGA 375 621 690 Antisense
AAGTCAACTTGTTTCGTCTTCTTCA 507 157 714 Antisense
GTATTGCAATACAGCGTCACCATTA 92 453 762 Antisense
GGGTATGTATTCATTCTGCCTTGTG 101 497 850 Antisense
CCTTGTGTCGTTGTGATCCCTAAAA 54 269 868 Antisense
Sequence Source Affymetrix Proprietary Database